Strain Fitness in Pseudomonas putida KT2440 around PP_2531

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,875,408	+		PP_2528	0.63	-0.8
2,875,409	-				+3.1
2,875,442	+		PP_2528	0.65	+1.3
2,875,443	-		PP_2528	0.66	+1.2
2,875,552	-		PP_2528	0.74	+0.6
2,875,728	+		PP_2528	0.88	-0.8
2,875,728	+		PP_2528	0.88	+0.2
2,875,806	+				+2.4
2,875,806	+				-2.6
2,875,807	-				-1.0
2,875,807	-				+1.1
2,875,807	-				+0.7
2,875,814	+				-0.8
2,876,001	-				-1.9
2,876,007	-				+1.3
2,876,007	-				-1.0
2,876,042	+				-1.1
2,876,043	-				+0.4
2,876,068	+				+0.4
2,876,069	-				-0.8
2,876,087	-				+0.7
2,876,262	+		PP_2530	0.62	-2.8
2,876,263	-		PP_2530	0.62	+0.4
2,876,380	+				-0.2
2,876,472	+				-0.2
2,876,473	-				+1.7
2,876,550	+		PP_2531	0.17	+1.1
2,876,570	+		PP_2531	0.19	+1.8
2,876,608	-		PP_2531	0.23	+1.2
2,876,695	+		PP_2531	0.32	+1.0
2,876,696	-		PP_2531	0.32	-0.1
2,876,696	-		PP_2531	0.32	+0.7
2,876,926	+		PP_2531	0.55	+1.1
2,876,926	+		PP_2531	0.55	-0.5
2,876,927	-		PP_2531	0.55	+1.8
2,876,927	-		PP_2531	0.55	+2.1
2,876,927	-		PP_2531	0.55	+0.5
2,876,927	-		PP_2531	0.55	-0.8
2,876,937	-		PP_2531	0.56	-2.1
2,876,943	+		PP_2531	0.57	-0.2
2,876,959	+		PP_2531	0.58	+0.4
2,876,960	-		PP_2531	0.58	-1.6
2,876,960	-		PP_2531	0.58	+1.8
2,877,034	+		PP_2531	0.66	-0.4
2,877,041	-		PP_2531	0.66	-1.2
2,877,088	+		PP_2531	0.71	+2.1
2,877,292	+				+0.3
2,877,409	+				+1.6
2,877,410	-				-2.0
2,877,410	-				-1.1
2,877,410	-				+1.1
2,877,478	-				-0.8
2,877,500	+				+0.6
2,877,527	+				-2.9
2,877,528	-				-0.0
2,877,528	-				-2.7
2,877,681	+		PP_2532	0.34	+0.7
2,877,682	-		PP_2532	0.34	-2.3
2,877,682	-		PP_2532	0.34	-0.3
2,877,682	-		PP_2532	0.34	-0.9
2,877,682	-		PP_2532	0.34	-1.4
2,877,888	+		PP_2532	0.76	-3.1
2,877,889	-		PP_2532	0.77	+0.6
2,877,889	-		PP_2532	0.77	-2.8
2,878,001	-				+1.0
2,878,119	+		PP_2533	0.11	-1.0
2,878,128	+		PP_2533	0.12	+0.2
2,878,147	-		PP_2533	0.14	-0.9
2,878,162	+		PP_2533	0.15	+0.5
2,878,169	+		PP_2533	0.16	+1.0
2,878,169	+		PP_2533	0.16	+0.3
2,878,274	+		PP_2533	0.27	+2.2
2,878,275	-		PP_2533	0.27	-0.1