Strain Fitness in Pseudomonas putida KT2440 around PP_2515

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,861,060	+		PP_2513	0.75	-0.7
2,861,061	-		PP_2513	0.75	+1.8
2,861,102	+		PP_2513	0.79	-1.0
2,861,102	+		PP_2513	0.79	-0.9
2,861,314	+				+1.6
2,861,365	+				-0.0
2,861,366	-				+1.7
2,861,404	+				+0.5
2,861,404	+				-1.6
2,861,404	+				+1.6
2,861,405	-				-2.1
2,861,405	-				-0.3
2,861,618	+		PP_2514	0.40	+4.2
2,861,619	-		PP_2514	0.40	+1.2
2,861,619	-		PP_2514	0.40	-1.7
2,861,793	+		PP_2514	0.64	+0.6
2,861,794	-		PP_2514	0.64	-0.4
2,861,794	-		PP_2514	0.64	-2.4
2,861,916	-		PP_2514	0.81	+0.8
2,862,008	+				-0.6
2,862,008	+				+2.7
2,862,011	+				+1.6
2,862,011	+				-0.7
2,862,012	-				-2.2
2,862,012	-				-1.3
2,862,012	-				-0.1
2,862,012	-				+0.8
2,862,134	-		PP_2515	0.11	+2.2
2,862,165	-		PP_2515	0.15	+1.8
2,862,174	+		PP_2515	0.16	-1.6
2,862,174	+		PP_2515	0.16	-2.0
2,862,174	+		PP_2515	0.16	+0.9
2,862,174	+		PP_2515	0.16	-0.4
2,862,174	+		PP_2515	0.16	-0.0
2,862,175	-		PP_2515	0.16	+0.8
2,862,175	-		PP_2515	0.16	+0.6
2,862,175	-		PP_2515	0.16	+1.3
2,862,177	+		PP_2515	0.17	+0.9
2,862,177	+		PP_2515	0.17	-2.7
2,862,178	-		PP_2515	0.17	+1.2
2,862,178	-		PP_2515	0.17	-2.8
2,862,222	+		PP_2515	0.23	+0.6
2,862,223	-		PP_2515	0.23	-1.3
2,862,244	+		PP_2515	0.25	-3.2
2,862,244	+		PP_2515	0.25	-2.6
2,862,245	-		PP_2515	0.25	-1.2
2,862,306	+		PP_2515	0.33	-0.5
2,862,346	-		PP_2515	0.38	-0.4
2,862,364	+		PP_2515	0.41	+1.9
2,862,409	-		PP_2515	0.47	-2.6
2,862,409	-		PP_2515	0.47	+0.7
2,862,414	+		PP_2515	0.47	-2.5
2,862,414	+		PP_2515	0.47	+0.8
2,862,414	+		PP_2515	0.47	+2.9
2,862,414	+		PP_2515	0.47	-3.0
2,862,440	+		PP_2515	0.51	-1.1
2,862,441	-		PP_2515	0.51	+1.2
2,862,513	+		PP_2515	0.60	+0.9
2,862,682	-		PP_2515	0.82	+0.5
2,862,876	+				+0.3
2,862,895	+				-0.2
2,862,904	-				+1.2
2,862,940	+				-2.0
2,863,229	+		PP_2516	0.24	-0.5
2,863,230	-		PP_2516	0.24	-2.8
2,863,566	+		PP_2516	0.52	-0.4
2,863,567	-		PP_2516	0.52	-1.6
2,863,567	-		PP_2516	0.52	-0.6
2,863,691	+		PP_2516	0.63	+0.5