Strain Fitness in Pseudomonas putida KT2440 around PP_2505

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,851,318	+		PP_5530	0.48	-1.9
2,851,318	+		PP_5530	0.48	+1.9
2,851,318	+		PP_5530	0.48	-0.7
2,851,318	+		PP_5530	0.48	-2.3
2,851,318	+		PP_5530	0.48	+0.7
2,851,318	+		PP_5530	0.48	-0.5
2,851,319	-		PP_5530	0.48	+0.9
2,851,319	-		PP_5530	0.48	+0.2
2,851,319	-		PP_5530	0.48	+0.9
2,851,319	-		PP_5530	0.48	+0.8
2,851,319	-		PP_5530	0.48	-0.8
2,851,344	+		PP_5530	0.60	+0.3
2,851,426	+				-0.1
2,851,460	+				+0.4
2,851,460	+				-1.8
2,851,461	-				+0.7
2,851,518	+				-2.0
2,851,555	+				+1.9
2,851,555	+				-0.0
2,851,556	-				-0.8
2,851,559	+				+1.1
2,851,570	+				-1.5
2,851,570	+				-1.0
2,851,570	+				+1.0
2,851,571	-				+1.7
2,851,571	-				-0.4
2,851,571	-				+0.1
2,851,571	-				-1.0
2,851,615	-				+2.9
2,851,670	+		PP_5531	0.19	+0.3
2,851,671	-		PP_5531	0.19	+1.2
2,851,739	+		PP_5531	0.32	-0.5
2,851,739	+		PP_5531	0.32	+1.6
2,851,739	+		PP_5531	0.32	-2.6
2,851,778	-		PP_5531	0.40	-0.1
2,851,851	+		PP_5531	0.54	-2.4
2,851,852	-		PP_5531	0.54	-2.0
2,851,852	-		PP_5531	0.54	+0.9
2,851,864	+		PP_5531	0.56	+0.3
2,851,884	+		PP_5531	0.60	+1.1
2,851,884	+		PP_5531	0.60	+1.3
2,851,885	-		PP_5531	0.61	+1.0
2,851,885	-		PP_5531	0.61	+0.0
2,851,920	+		PP_5531	0.67	-0.3
2,851,921	-		PP_5531	0.67	-0.2
2,851,942	+		PP_5531	0.71	-1.3
2,851,959	-		PP_5531	0.75	+0.6
2,852,009	+		PP_5531	0.84	-0.2
2,852,009	+		PP_5531	0.84	+1.0
2,852,009	+		PP_5531	0.84	-2.3
2,852,010	-		PP_5531	0.85	-0.9
2,852,011	+		PP_5531	0.85	+1.6
2,852,055	-				+0.4
2,852,075	+				-0.6
2,852,075	+				+1.4
2,852,197	-				-3.1
2,852,197	-				+0.3
2,852,242	-				-1.8
2,852,264	-				+0.1
2,852,264	-				+0.7
2,852,286	+				-0.7
2,852,287	-				+0.1
2,852,287	-				-2.4
2,852,313	+				+1.0
2,852,314	-				+1.2
2,852,314	-				-2.1
2,852,314	-				-0.9
2,852,349	+				+0.7
2,852,349	+				-1.0
2,852,350	-				+0.3
2,852,372	+				-2.5
2,852,372	+				-3.1
2,852,521	+		PP_2505	0.22	+0.6
2,852,522	-				+1.6
2,852,587	+		PP_2505	0.28	+0.5
2,852,588	-		PP_2505	0.28	+1.9
2,852,682	+		PP_2505	0.37	-2.3
2,852,682	+		PP_2505	0.37	+1.0
2,852,682	+		PP_2505	0.37	-2.4
2,852,683	-		PP_2505	0.37	+1.3
2,852,693	+		PP_2505	0.38	-1.7
2,852,693	+		PP_2505	0.38	+1.1
2,852,694	-		PP_2505	0.39	+0.4
2,852,694	-		PP_2505	0.39	+0.8
2,852,694	-		PP_2505	0.39	+0.8
2,852,694	-		PP_2505	0.39	+1.1
2,852,699	+		PP_2505	0.39	+2.0
2,852,765	+		PP_2505	0.45	-0.3
2,852,765	+		PP_2505	0.45	+0.4
2,852,765	+		PP_2505	0.45	+0.6
2,852,765	+		PP_2505	0.45	+1.0
2,852,765	+		PP_2505	0.45	+0.1
2,852,765	+		PP_2505	0.45	+0.6
2,852,765	+		PP_2505	0.45	-0.8
2,852,765	+		PP_2505	0.45	+2.1
2,852,843	+		PP_2505	0.53	-0.4
2,852,862	+		PP_2505	0.55	+1.1
2,852,883	-		PP_2505	0.57	+1.1
2,852,883	-		PP_2505	0.57	+0.8
2,852,896	+		PP_2505	0.58	-0.8
2,852,979	-		PP_2505	0.66	-0.1
2,852,994	+		PP_2505	0.67	-0.6
2,852,994	+		PP_2505	0.67	-1.8
2,852,995	-		PP_2505	0.68	+1.9
2,852,995	-		PP_2505	0.68	-2.0
2,853,004	+		PP_2505	0.68	+1.1
2,853,006	+		PP_2505	0.69	-0.0
2,853,006	+		PP_2505	0.69	-1.6
2,853,006	+		PP_2505	0.69	-1.0
2,853,007	-		PP_2505	0.69	-0.5
2,853,007	-		PP_2505	0.69	+1.4
2,853,007	-		PP_2505	0.69	-0.5
2,853,007	-		PP_2505	0.69	+2.6
2,853,007	-		PP_2505	0.69	+1.2
2,853,076	+		PP_2505	0.75	-0.4
2,853,077	-		PP_2505	0.75	+0.1
2,853,179	+		PP_2505	0.85	-0.6
2,853,180	-		PP_2505	0.85	+0.2
2,853,210	-		PP_2505	0.88	-1.3
2,853,210	-		PP_2505	0.88	-2.6
2,853,228	-				-1.1
2,853,228	-				-0.0
2,853,236	-				+0.5
2,853,244	-				+0.4
2,853,244	-				-0.0
2,853,274	+				-0.3
2,853,274	+				+0.4
2,853,274	+				-2.7
2,853,274	+				+0.9
2,853,275	-				+0.3
2,853,453	-				+0.6
2,853,453	-				-1.4
2,853,453	-				+0.9
2,853,470	+				+0.4
2,853,471	-				+2.3
2,853,492	-				-3.0
2,853,492	-				+0.7
2,853,493	+				-0.1
2,853,494	-				+0.8
2,853,494	-				+0.4
2,853,557	+				-0.4
2,853,558	-				+1.5
2,853,604	+				-0.6
2,853,605	-				+1.8
2,853,771	+		PP_2506	0.23	-0.1
2,853,771	+		PP_2506	0.23	+0.3
2,853,771	+		PP_2506	0.23	-1.0
2,853,771	+		PP_2506	0.23	+1.0
2,853,932	+		PP_2506	0.52	-0.2
2,853,933	-		PP_2506	0.53	-1.9
2,853,933	-		PP_2506	0.53	+0.2
2,853,979	+		PP_2506	0.61	-0.3
2,853,980	-		PP_2506	0.61	+1.8
2,853,980	-		PP_2506	0.61	+0.6
2,853,980	-		PP_2506	0.61	+0.1
2,854,166	+				+0.2
2,854,219	+				+0.4
2,854,220	-				-1.2
2,854,250	+				+0.4
2,854,323	-		PP_2507	0.12	+2.2
2,854,323	-		PP_2507	0.12	-0.4