Strain Fitness in Pseudomonas putida KT2440 around PP_2473

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,818,321	+				+0.9
2,818,400	+				+1.6
2,818,400	+				+1.1
2,818,401	-				+1.5
2,818,401	-				-2.0
2,818,401	-				+0.8
2,818,401	-				+1.4
2,818,464	+				-0.4
2,818,465	-				-3.5
2,818,492	-				+1.3
2,818,492	-				+2.1
2,818,536	+				+1.3
2,818,577	-				+0.7
2,818,607	-				-2.4
2,818,634	-				-1.2
2,818,634	-				+0.1
2,818,707	-		PP_5527	0.22	-1.8
2,818,707	-		PP_5527	0.22	+0.3
2,818,710	+		PP_5527	0.24	+1.0
2,818,710	+		PP_5527	0.24	-0.4
2,818,710	+		PP_5527	0.24	-1.6
2,818,711	-		PP_5527	0.24	+0.2
2,818,716	+		PP_5527	0.26	+1.5
2,818,716	+		PP_5527	0.26	+0.6
2,818,717	-				+1.6
2,818,753	+		PP_5527	0.40	-0.8
2,818,753	+		PP_5527	0.40	+2.0
2,818,753	+		PP_5527	0.40	+0.6
2,818,753	+		PP_5527	0.40	+1.6
2,818,754	-		PP_5527	0.41	-0.3
2,818,754	-		PP_5527	0.41	-1.8
2,818,754	-		PP_5527	0.41	-2.6
2,818,772	+		PP_5527	0.48	-1.0
2,818,773	-		PP_5527	0.48	-0.0
2,818,850	+		PP_5527	0.78	+1.7
2,818,943	+				+1.0
2,818,943	+				+0.7
2,818,975	+				+1.2
2,818,976	-				-1.1
2,818,976	-				+0.6
2,819,033	+				+0.9
2,819,034	-				-1.8
2,819,080	+				-1.2
2,819,088	+				-1.1
2,819,089	-				+0.4
2,819,092	+				-1.3
2,819,093	-				+2.1
2,819,093	-				-0.0
2,819,109	+				+0.1
2,819,174	+				-3.0
2,819,174	+				-1.3
2,819,200	+				-1.1
2,819,200	+				-1.2
2,819,200	+				+1.6
2,819,222	+				+0.3
2,819,222	+				+0.2
2,819,223	-				-1.4
2,819,223	-				-0.6
2,819,242	+				-0.4
2,819,274	+				+0.1
2,819,274	+				+0.2
2,819,275	-				+1.9
2,819,275	-				-1.2
2,819,275	-				-0.5
2,819,358	-		PP_2473	0.13	-0.0
2,819,414	+		PP_2473	0.19	+1.8
2,819,414	+		PP_2473	0.19	+1.3
2,819,415	-				+1.6
2,819,415	-		PP_2473	0.19	-2.2
2,819,415	-		PP_2473	0.19	+0.1
2,819,464	-		PP_2473	0.24	+1.7
2,819,464	-		PP_2473	0.24	+1.6
2,819,464	-		PP_2473	0.24	-0.6
2,819,543	+		PP_2473	0.32	+1.1
2,819,544	-		PP_2473	0.32	+2.1
2,819,544	-		PP_2473	0.32	+1.1
2,819,615	+		PP_2473	0.40	-3.4
2,819,735	+		PP_2473	0.52	+0.6
2,819,735	+		PP_2473	0.52	+1.8
2,819,736	-		PP_2473	0.52	+1.1
2,819,736	-				+1.6
2,819,736	-		PP_2473	0.52	-1.9
2,819,738	+		PP_2473	0.52	+0.8
2,819,738	+		PP_2473	0.52	-0.8
2,819,739	-		PP_2473	0.52	-1.8
2,819,803	+		PP_2473	0.59	-0.4
2,819,803	+		PP_2473	0.59	-2.4
2,819,803	+		PP_2473	0.59	+0.8
2,819,804	-		PP_2473	0.59	+1.2
2,819,846	+		PP_2473	0.63	-0.3
2,819,846	+		PP_2473	0.63	-0.4
2,819,847	-		PP_2473	0.64	-0.3
2,819,853	-		PP_2473	0.64	+0.9
2,819,909	+		PP_2473	0.70	+0.5
2,819,909	+		PP_2473	0.70	+1.4
2,819,909	+		PP_2473	0.70	-0.8
2,819,910	-		PP_2473	0.70	+0.6
2,819,928	+		PP_2473	0.72	-2.1
2,819,928	+		PP_2473	0.72	+0.8
2,819,928	+		PP_2473	0.72	-1.2
2,819,929	-		PP_2473	0.72	+1.4
2,819,929	-		PP_2473	0.72	+0.9
2,819,929	-		PP_2473	0.72	-0.7
2,819,929	-		PP_2473	0.72	-3.4
2,819,929	-		PP_2473	0.72	-2.1
2,819,929	-		PP_2473	0.72	-0.8
2,819,947	+		PP_2473	0.74	-0.1
2,819,956	+		PP_2473	0.75	+0.6
2,819,999	+		PP_2473	0.79	+1.7
2,820,023	-		PP_2473	0.82	-2.1
2,820,045	+		PP_2473	0.84	+1.1
2,820,045	+		PP_2473	0.84	-0.4
2,820,045	+		PP_2473	0.84	+0.1
2,820,046	-		PP_2473	0.84	+0.7
2,820,046	-		PP_2473	0.84	+0.4
2,820,046	-		PP_2473	0.84	+1.0
2,820,061	-		PP_2473	0.86	-2.8
2,820,088	+		PP_2473	0.88	-2.7
2,820,089	-		PP_2473	0.89	+0.3
2,820,092	-		PP_2473	0.89	-0.4
2,820,110	+				-1.6
2,820,110	+				+1.1
2,820,181	+				+0.4
2,820,181	+				+2.0
2,820,235	+				+1.9
2,820,235	+				-2.2
2,820,251	+				+0.3
2,820,251	+				+1.2
2,820,252	-				-2.3
2,820,252	-				-0.9
2,820,252	-				-0.2
2,820,252	-				-1.6
2,820,272	-				-1.4
2,820,296	+				-3.1
2,820,296	+				-0.8
2,820,297	-				-1.2
2,820,297	-				-1.6
2,820,297	-				+1.1
2,820,297	-				+1.6
2,820,297	-				-0.6
2,820,297	-				+0.6
2,820,298	+				-1.0
2,820,298	+				+0.1
2,820,298	+				+0.5
2,820,299	-				+1.8
2,820,427	+				+1.7
2,820,504	-				-2.0
2,820,504	-				+1.6
2,820,531	+				-3.0
2,820,531	+				+0.6
2,821,063	+		PP_2474	0.57	-0.0
2,821,147	-		PP_2474	0.70	-0.9