Strain Fitness in Pseudomonas putida KT2440 around PP_2429

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,776,136	+		PP_2428	0.39	-0.4
2,776,137	-		PP_2428	0.39	-2.4
2,776,337	+		PP_2428	0.56	+1.6
2,776,337	+		PP_2428	0.56	+2.2
2,776,337	+		PP_2428	0.56	-0.2
2,776,338	-		PP_2428	0.56	+0.2
2,776,338	-		PP_2428	0.56	-3.2
2,776,341	+		PP_2428	0.56	+0.6
2,776,342	-		PP_2428	0.56	-0.4
2,776,342	-		PP_2428	0.56	-2.3
2,776,383	+		PP_2428	0.59	+1.5
2,776,384	-		PP_2428	0.59	+1.7
2,776,389	+				-1.5
2,776,389	+		PP_2428	0.60	+0.0
2,776,389	+		PP_2428	0.60	-0.2
2,776,389	+		PP_2428	0.60	+0.6
2,776,390	-		PP_2428	0.60	-1.3
2,776,390	-		PP_2428	0.60	-0.6
2,776,390	-		PP_2428	0.60	-0.8
2,776,390	-		PP_2428	0.60	-1.3
2,776,392	-		PP_2428	0.60	-1.3
2,776,414	+		PP_2428	0.62	-0.7
2,776,414	+		PP_2428	0.62	-0.1
2,776,415	-		PP_2428	0.62	-0.3
2,776,532	-		PP_2428	0.72	-0.5
2,776,594	-		PP_2428	0.77	-2.2
2,776,722	+		PP_2428	0.87	-1.6
2,776,722	+		PP_2428	0.87	-1.0
2,776,722	+		PP_2428	0.87	-2.2
2,776,832	-				+0.9
2,777,115	+		PP_2429	0.33	+2.2
2,777,325	+		PP_2429	0.69	+1.2
2,777,607	+				-1.7
2,777,733	+		PP_2430	0.21	-0.5
2,777,733	+		PP_2430	0.21	+2.2
2,778,087	+		PP_2430	0.64	-1.8
2,778,129	+		PP_2430	0.69	-0.5
2,778,130	-		PP_2430	0.69	-1.5
2,778,197	+		PP_2430	0.77	-2.2
2,778,197	+		PP_2430	0.77	-1.7
2,778,197	+		PP_2430	0.77	-2.6
2,778,203	+				+1.5
2,778,204	-		PP_2430	0.78	+0.4
2,778,204	-		PP_2430	0.78	+0.2
2,778,306	+				-2.2
2,778,307	-				+1.3
2,778,307	-				-0.6
2,778,307	-				-0.5
2,778,403	+				-0.4
2,778,404	-				+0.5
2,778,416	+				-0.2