Strain Fitness in Pseudomonas putida KT2440 around PP_2421

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,768,274	+		PP_2420	0.80	-2.8
2,768,275	-		PP_2420	0.80	+0.7
2,768,651	-				+0.5
2,768,848	+				+0.4
2,768,848	+				+0.1
2,769,134	+				-2.6
2,769,230	+		PP_2421	0.18	-0.3
2,769,230	+		PP_2421	0.18	-1.2
2,769,230	+		PP_2421	0.18	-0.6
2,769,230	+		PP_2421	0.18	+0.6
2,769,230	+		PP_2421	0.18	-0.3
2,769,230	+		PP_2421	0.18	-1.7
2,769,230	+		PP_2421	0.18	-0.7
2,769,230	+		PP_2421	0.18	-1.6
2,769,231	-		PP_2421	0.18	-1.4
2,769,458	+		PP_2421	0.59	-1.2
2,769,459	-		PP_2421	0.59	-1.4
2,769,512	+		PP_2421	0.69	+0.1
2,769,512	+		PP_2421	0.69	+0.4
2,769,513	-				+0.4
2,769,513	-		PP_2421	0.69	-1.2
2,769,513	-		PP_2421	0.69	-2.4
2,769,513	-		PP_2421	0.69	+0.8
2,769,618	-		PP_2421	0.88	+1.2
2,769,824	+		PP_2422	0.12	+1.3
2,770,034	+		PP_2422	0.71	-1.9
2,770,035	-		PP_2422	0.72	+0.7
2,770,035	-		PP_2422	0.72	-0.1
2,770,087	+		PP_2422	0.86	-1.2
2,770,088	-		PP_2422	0.87	+0.4
2,770,088	-		PP_2422	0.87	-1.6
2,770,088	-				+0.4
2,770,095	+		PP_2422	0.89	-0.3
2,770,096	-		PP_2422	0.89	-0.1
2,770,250	+				-1.9
2,770,251	-				-2.5
2,770,298	+				-1.4
2,770,299	-				-0.9
2,770,299	-				-0.9
2,770,301	+				+1.4
2,770,301	+				-2.0
2,770,353	-		PP_2423	0.12	+0.5
2,770,470	-		PP_2423	0.25	+0.3
2,770,535	+		PP_2423	0.32	+0.7
2,770,535	+		PP_2423	0.32	-0.6
2,770,536	-		PP_2423	0.33	+1.7
2,770,536	-		PP_2423	0.33	-0.5
2,770,544	+		PP_2423	0.33	+0.9
2,770,611	-		PP_2423	0.41	-0.1
2,770,611	-		PP_2423	0.41	-3.2
2,770,650	-		PP_2423	0.45	-0.6
2,770,667	+		PP_2423	0.47	-1.9
2,770,668	-		PP_2423	0.47	+0.1