Strain Fitness in Pseudomonas putida KT2440 around PP_2419

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,764,427	+		PP_2418	0.47	-0.5
2,764,427	+		PP_2418	0.47	-0.1
2,764,428	-		PP_2418	0.48	-0.7
2,764,514	+		PP_2418	0.55	-0.9
2,764,515	-		PP_2418	0.56	+1.1
2,764,515	-		PP_2418	0.56	-2.7
2,764,515	-		PP_2418	0.56	-0.2
2,764,515	-		PP_2418	0.56	-2.2
2,764,515	-		PP_2418	0.56	-0.2
2,764,682	+		PP_2418	0.71	+1.4
2,764,682	+		PP_2418	0.71	+0.2
2,764,693	+		PP_2418	0.72	-3.4
2,764,694	-		PP_2418	0.72	-2.5
2,764,694	-		PP_2418	0.72	-0.4
2,764,748	+		PP_2418	0.77	-1.2
2,764,748	+		PP_2418	0.77	-2.3
2,764,748	+		PP_2418	0.77	-1.4
2,764,749	-		PP_2418	0.77	+1.1
2,764,882	+		PP_2418	0.89	-2.6
2,764,882	+		PP_2418	0.89	-0.9
2,764,883	-		PP_2418	0.89	-0.9
2,764,883	-		PP_2418	0.89	+0.3
2,765,040	+				-2.8
2,765,041	-				-0.6
2,765,134	+				+0.4
2,765,134	+				-2.9
2,765,134	+				+3.4
2,765,165	+				+0.3
2,765,190	+				+1.9
2,765,190	+				+0.0
2,765,223	+				-1.5
2,765,224	-				+1.1
2,765,224	-				-2.3
2,765,325	+				-1.1
2,765,326	-				+0.6
2,765,326	-				-2.6
2,765,326	-				-0.2
2,765,371	+		PP_2419	0.10	-2.3
2,765,388	+		PP_2419	0.11	-1.2
2,765,389	-		PP_2419	0.12	+0.1
2,765,430	+		PP_2419	0.15	-2.8
2,765,431	-		PP_2419	0.15	-1.3
2,765,435	+		PP_2419	0.16	-0.6
2,765,435	+		PP_2419	0.16	+0.6
2,765,435	+		PP_2419	0.16	-0.1
2,765,436	-		PP_2419	0.16	-0.2
2,765,448	+		PP_2419	0.17	-2.4
2,765,448	+		PP_2419	0.17	-1.2
2,765,448	+		PP_2419	0.17	-3.4
2,765,448	+		PP_2419	0.17	-2.2
2,765,464	-		PP_2419	0.18	-1.4
2,765,464	-		PP_2419	0.18	-1.2
2,765,724	+		PP_2419	0.40	-0.1
2,765,724	+		PP_2419	0.40	-1.9
2,765,725	-		PP_2419	0.40	-0.9
2,765,817	+		PP_2419	0.48	+0.4
2,766,043	-		PP_2419	0.68	+1.1
2,766,043	-		PP_2419	0.68	-1.5
2,766,171	+		PP_2419	0.79	+2.4
2,766,171	+		PP_2419	0.79	-0.7
2,766,171	+		PP_2419	0.79	-2.7
2,766,458	-				+1.8
2,766,544	-				+0.3
2,766,611	+				+0.6
2,766,611	+				+0.5
2,766,611	+				-0.3
2,766,612	-				-2.4
2,766,612	-				-0.2
2,766,612	-				-0.6
2,766,612	-				+0.7
2,766,615	+				-0.3
2,766,615	+				+2.3
2,766,739	-				+0.4
2,766,739	-				+0.8
2,766,753	+		PP_2420	0.10	-2.2
2,766,753	+		PP_2420	0.10	-0.2
2,766,754	-		PP_2420	0.10	+2.0
2,766,817	+		PP_2420	0.13	+0.8
2,766,818	-		PP_2420	0.13	-0.7
2,766,895	-		PP_2420	0.17	+0.3
2,766,906	-		PP_2420	0.17	-0.4
2,767,138	-		PP_2420	0.28	+0.4
2,767,206	+		PP_2420	0.31	+0.0
2,767,206	+		PP_2420	0.31	-0.5
2,767,233	+		PP_2420	0.32	-1.4
2,767,233	+		PP_2420	0.32	-1.6
2,767,234	-		PP_2420	0.32	+0.1
2,767,331	+		PP_2420	0.36	+1.3
2,767,332	-		PP_2420	0.37	-0.3
2,767,396	+		PP_2420	0.39	+0.0
2,767,396	+		PP_2420	0.39	-1.2
2,767,396	+		PP_2420	0.39	-1.2
2,767,396	+		PP_2420	0.39	+0.2
2,767,396	+		PP_2420	0.39	-0.8
2,767,396	+		PP_2420	0.39	+0.4
2,767,397	-		PP_2420	0.40	-1.1
2,767,397	-		PP_2420	0.40	+0.8