Strain Fitness in Pseudomonas putida KT2440 around PP_2398

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,742,661	+		PP_2396	0.60	-2.8
2,742,662	-		PP_2396	0.60	-0.3
2,742,662	-		PP_2396	0.60	+0.4
2,742,808	-		PP_2396	0.85	-1.0
2,742,946	+				-0.2
2,742,947	-				-2.0
2,742,947	-				+0.3
2,742,957	-				+0.0
2,742,957	-				-2.1
2,742,977	+		PP_2397	0.11	+1.4
2,742,977	+		PP_2397	0.11	-1.4
2,742,977	+		PP_2397	0.11	-0.2
2,742,978	-		PP_2397	0.11	+1.1
2,743,008	-		PP_2397	0.16	-0.4
2,743,008	-		PP_2397	0.16	-0.4
2,743,033	+		PP_2397	0.19	-3.4
2,743,034	-		PP_2397	0.20	-0.2
2,743,276	+		PP_2397	0.56	-2.6
2,743,567	+				+0.4
2,743,567	+				+0.0
2,743,568	-				-2.4
2,743,664	+				-1.6
2,743,665	-				-1.6
2,743,769	-		PP_2398	0.16	+0.7
2,743,931	-		PP_2398	0.35	-1.7
2,743,931	-		PP_2398	0.35	-3.0
2,743,931	-		PP_2398	0.35	-1.6
2,743,954	+		PP_2398	0.38	-2.5
2,743,992	-		PP_2398	0.43	-0.1
2,744,066	-		PP_2398	0.52	-2.7
2,744,066	-		PP_2398	0.52	-2.5
2,744,066	-		PP_2398	0.52	+1.4
2,744,066	-		PP_2398	0.52	-2.4
2,744,068	+		PP_2398	0.52	-0.9
2,744,068	+		PP_2398	0.52	+0.8
2,744,068	+		PP_2398	0.52	-0.8
2,744,069	-		PP_2398	0.52	-2.3
2,744,080	+		PP_2398	0.53	-2.2
2,744,164	+		PP_2398	0.63	-0.2
2,744,165	-		PP_2398	0.63	+0.5
2,744,165	-		PP_2398	0.63	+1.0
2,744,188	+		PP_2398	0.66	-0.4
2,744,189	-		PP_2398	0.66	-3.0
2,744,257	+		PP_2398	0.74	-1.4
2,744,355	-		PP_2398	0.86	-0.6
2,744,386	+				+1.0
2,744,387	-				-2.6
2,744,387	-				-1.3
2,744,425	-				-2.3
2,744,489	+				+0.9
2,744,489	+				-1.8
2,744,489	+				-0.1
2,744,490	-				-4.0
2,744,490	-				+0.4
2,744,490	-				-0.6
2,744,582	+		PP_2399	0.17	-2.3
2,744,582	+		PP_2399	0.17	-1.8
2,744,664	+		PP_2399	0.29	+0.1
2,744,676	-		PP_2399	0.31	+0.0
2,744,685	-		PP_2399	0.32	+1.1
2,744,786	+		PP_2399	0.47	+1.7
2,744,787	-		PP_2399	0.47	-1.6
2,744,810	+		PP_2399	0.50	+1.6
2,744,811	-		PP_2399	0.50	-2.4
2,744,811	-		PP_2399	0.50	-1.1
2,744,904	-		PP_2399	0.64	+0.6
2,745,025	+		PP_2399	0.81	-1.6
2,745,025	+		PP_2399	0.81	-1.2
2,745,026	-		PP_2399	0.81	-2.3
2,745,026	-		PP_2399	0.81	-2.1
2,745,026	-		PP_2399	0.81	-2.3
2,745,277	+		PP_2400	0.17	+0.3
2,745,278	-		PP_2400	0.18	+0.5
2,745,296	-		PP_2400	0.21	+0.6
2,745,325	+		PP_2400	0.27	+0.5
2,745,325	+		PP_2400	0.27	-0.0
2,745,326	-		PP_2400	0.27	-3.3
2,745,326	-		PP_2400	0.27	-1.8
2,745,387	+		PP_2400	0.40	-3.6
2,745,459	+		PP_2400	0.55	+1.1
2,745,459	+		PP_2400	0.55	-0.9