Strain Fitness in Pseudomonas putida KT2440 around PP_2394

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,732,164	+		PP_2393	0.64	+0.4
2,732,164	+		PP_2393	0.64	-2.2
2,732,164	+		PP_2393	0.64	+0.1
2,732,281	+		PP_2393	0.68	-0.6
2,732,293	+		PP_2393	0.69	+0.6
2,732,293	+		PP_2393	0.69	-1.3
2,732,518	+		PP_2393	0.79	-2.7
2,732,563	+		PP_2393	0.80	+1.3
2,732,563	+		PP_2393	0.80	-1.5
2,732,564	-		PP_2393	0.80	-2.6
2,732,564	-		PP_2393	0.80	-1.2
2,732,630	-		PP_2393	0.83	-3.0
2,732,657	-		PP_2393	0.84	+0.0
2,732,666	-		PP_2393	0.85	+1.3
2,732,666	-		PP_2393	0.85	+1.2
2,732,666	-		PP_2393	0.85	-1.3
2,732,677	+		PP_2393	0.85	+0.2
2,732,677	+		PP_2393	0.85	+1.3
2,732,678	-		PP_2393	0.85	-1.2
2,732,681	+		PP_2393	0.85	-0.2
2,732,807	-				-2.3
2,732,807	-				+0.3
2,732,807	-				-0.6
2,732,860	+				-1.6
2,732,926	+				-0.2
2,732,926	+				-2.4
2,732,927	-				-0.6
2,732,927	-				+0.6
2,732,942	+				-0.8
2,733,011	+				-1.7
2,733,012	-				-0.2
2,733,012	-				-2.7
2,733,033	+				+1.2
2,733,034	-				-3.0
2,733,034	-				+1.6
2,733,037	+				-2.7
2,733,037	+				-2.7
2,733,037	+				+1.3
2,733,037	+				+1.1
2,733,037	+				+0.6
2,733,037	+				+0.3
2,733,038	-				-1.5
2,733,038	-				-0.5
2,733,038	-				-1.5
2,733,038	-				-1.8
2,733,038	-				-0.8
2,733,038	-				+0.5
2,733,038	-				-1.8
2,733,038	-				+0.6
2,733,041	+				-2.5
2,733,041	+				+1.1
2,733,041	+				-2.1
2,733,042	-				+1.2
2,733,042	-				-2.2
2,733,114	+				-1.1
2,733,114	+				+0.2
2,733,114	+				+0.0
2,733,115	-				-0.0
2,733,115	-				+0.8
2,733,115	-				-0.4
2,733,141	+				-2.2
2,733,175	+				-1.0
2,733,176	-				-0.4
2,733,176	-				-1.2
2,733,299	+				+1.7
2,733,394	+				-2.0
2,733,421	+				-2.7
2,733,422	-				-0.7
2,733,422	-				-0.8
2,733,422	-				-0.3
2,733,422	-				-0.2
2,733,422	-				-0.9
2,733,422	-				+1.1
2,733,425	+				+1.7
2,733,426	-				-1.7
2,733,461	-				-0.5
2,733,461	-				-1.0
2,733,564	+		PP_2394	0.10	-1.8
2,733,565	-		PP_2394	0.10	+0.9
2,733,565	-		PP_2394	0.10	-1.2
2,733,691	+		PP_2394	0.13	-3.0
2,733,734	+		PP_2394	0.14	+1.2
2,733,734	+		PP_2394	0.14	-1.1
2,733,734	+		PP_2394	0.14	-2.6
2,733,735	-		PP_2394	0.14	-1.3
2,733,735	-		PP_2394	0.14	+0.3
2,733,735	-				+1.3
2,733,919	+		PP_2394	0.18	+0.3
2,733,919	+		PP_2394	0.18	+2.3
2,733,919	+		PP_2394	0.18	-1.0
2,733,919	+		PP_2394	0.18	-0.6
2,733,919	+		PP_2394	0.18	+0.1
2,733,919	+		PP_2394	0.18	-0.7
2,733,920	-		PP_2394	0.18	-2.5
2,733,924	-		PP_2394	0.19	+1.4
2,733,973	+		PP_2394	0.20	-0.7
2,733,973	+		PP_2394	0.20	+0.5
2,734,437	-		PP_2394	0.30	+0.9
2,734,475	+		PP_2394	0.31	-3.0
2,734,476	-		PP_2394	0.31	-1.5
2,734,921	+		PP_2394	0.41	-0.7
2,734,921	+		PP_2394	0.41	+0.8
2,734,921	+		PP_2394	0.41	+0.2
2,734,921	+		PP_2394	0.41	+2.2
2,734,989	+		PP_2394	0.43	-3.0
2,735,140	+		PP_2394	0.46	-2.2
2,735,140	+				+1.3
2,735,180	+		PP_2394	0.47	-0.9
2,735,341	+		PP_2394	0.51	-2.7
2,735,471	+		PP_2394	0.54	+0.5
2,735,599	+		PP_2394	0.56	-1.2
2,735,600	-		PP_2394	0.56	-1.8
2,735,600	-		PP_2394	0.56	+0.3
2,735,869	-		PP_2394	0.63	+1.0
2,735,921	+		PP_2394	0.64	-2.4
2,735,941	+		PP_2394	0.64	-0.4
2,735,941	+		PP_2394	0.64	-2.7
2,736,466	+		PP_2394	0.76	-1.1
2,736,467	-		PP_2394	0.76	-1.7
2,736,553	-		PP_2394	0.78	+0.7
2,736,699	+		PP_2394	0.81	+0.5
2,736,699	+		PP_2394	0.81	-1.2
2,736,993	-		PP_2394	0.88	-2.6
2,737,102	+				-0.5
2,737,102	+				+0.5
2,737,204	+				-2.7
2,737,205	-				-2.1
2,737,205	-				-1.7
2,737,205	-				-0.0
2,737,295	-				+1.3
2,737,295	-				-0.4
2,737,324	+				-0.7
2,737,500	+				+0.3
2,737,554	+				+0.8
2,737,554	+				-2.1
2,737,555	-				-1.8
2,737,555	-				+0.3
2,737,558	+				-2.1
2,737,558	+				-2.7
2,737,558	+				-0.2
2,737,558	+				-1.8
2,737,558	+				-0.2
2,737,558	+				-1.2
2,737,559	-				+0.8
2,737,559	-				+1.3
2,737,559	-				-2.3
2,737,559	-				-1.7
2,737,559	-				-0.4
2,737,559	-				-2.2
2,737,559	-				-1.2
2,737,559	-				-1.2
2,737,560	+				+0.7
2,737,560	+				+0.2
2,737,561	-				+0.2
2,737,562	+				-0.4
2,737,562	+				-0.4
2,737,562	+				+0.8
2,737,562	+				-0.4
2,737,562	+				-3.1
2,737,563	-				+2.6
2,737,563	-				-2.4
2,737,588	+				-1.0
2,737,588	+				-0.2
2,737,588	+				-3.0
2,737,860	-				-0.6
2,737,880	+				+1.9
2,737,962	-				-2.3
2,738,202	+		PP_2395	0.13	-2.8
2,738,202	+		PP_2395	0.13	-2.6
2,738,203	-		PP_2395	0.13	-1.0
2,738,217	-		PP_2395	0.13	-1.0
2,738,237	+		PP_2395	0.14	-0.2
2,738,237	+		PP_2395	0.14	-1.2
2,738,445	-		PP_2395	0.18	-1.5