Strain Fitness in Pseudomonas putida KT2440 around PP_2349

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,678,289	-		PP_2348	0.48	-2.0
2,678,319	+		PP_2348	0.50	+1.7
2,678,319	+		PP_2348	0.50	+0.1
2,679,030	-				-0.8
2,679,030	-				+0.1
2,679,049	+				-2.4
2,679,056	-				-0.2
2,679,056	-				-2.4
2,679,056	-				+0.3
2,679,177	+				-0.2
2,679,178	-				+2.6
2,679,398	+		PP_2349	0.12	-2.5
2,679,399	-		PP_2349	0.12	-1.0
2,679,451	-		PP_2349	0.17	-2.3
2,679,509	+		PP_2349	0.22	-1.1
2,679,509	+		PP_2349	0.22	-2.3
2,679,510	-		PP_2349	0.22	+0.3
2,679,753	-		PP_2349	0.43	-2.4
2,679,753	-		PP_2349	0.43	-0.6
2,679,753	-		PP_2349	0.43	-3.1
2,679,753	-		PP_2349	0.43	-2.0
2,680,024	+		PP_2349	0.66	+0.8
2,680,436	+				-3.0
2,680,436	+				-3.1
2,680,437	-				+1.0
2,680,437	-				-0.6
2,680,498	-		PP_2350	0.13	+0.6
2,680,566	+		PP_2350	0.21	-2.3
2,680,594	-		PP_2350	0.24	-0.3
2,680,722	+		PP_2350	0.39	+0.3
2,680,723	-		PP_2350	0.39	-3.1
2,680,723	-		PP_2350	0.39	-0.1
2,680,728	+		PP_2350	0.39	-0.1
2,680,729	-		PP_2350	0.39	-2.1
2,680,729	-		PP_2350	0.39	+0.8
2,680,729	-		PP_2350	0.39	+1.3
2,680,806	+		PP_2350	0.48	-0.6
2,680,818	+		PP_2350	0.50	-0.3
2,681,055	+		PP_2350	0.77	+2.3
2,681,056	-		PP_2350	0.77	+1.9
2,681,056	-		PP_2350	0.77	-1.9
2,681,233	+				-1.3
2,681,283	+				-1.9
2,681,283	+				-1.3
2,681,283	+				+0.5
2,681,283	+				-0.1
2,681,283	+				-0.9
2,681,284	-				+1.2
2,681,288	+				-3.8
2,681,289	-				-1.7
2,681,306	-				+1.2
2,681,314	+				-2.6
2,681,354	+				-0.0
2,681,355	-				+0.2
2,681,377	-				-0.5
2,681,377	-				-0.7
2,681,377	-				+0.3
2,681,387	-				+1.2
2,681,407	+				-1.0
2,681,408	-				-2.1