Strain Fitness in Pseudomonas putida KT2440 around PP_2279

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,599,636	+		PP_2277	0.70	+1.0
2,599,863	-		PP_2277	0.87	+1.8
2,599,882	+		PP_2277	0.88	-0.3
2,599,931	+				-0.0
2,599,932	-				+2.7
2,600,088	-				-1.2
2,600,182	-		PP_2278	0.41	+0.5
2,600,276	-		PP_2278	0.89	+1.5
2,600,294	+				+1.9
2,600,295	-				+0.9
2,600,295	-				+0.6
2,600,295	-				+1.4
2,600,295	-				+0.5
2,600,319	+				+0.3
2,600,319	+		PP_5512	0.11	-0.9
2,600,320	-		PP_5512	0.11	-2.4
2,600,331	-		PP_5512	0.16	+0.9
2,600,407	+		PP_5512	0.51	+1.0
2,600,407	+		PP_5512	0.51	+0.1
2,600,407	+		PP_5512	0.51	+1.8
2,600,407	+		PP_5512	0.51	-1.7
2,600,408	-		PP_5512	0.51	+1.1
2,600,408	-		PP_5512	0.51	-2.2
2,600,484	+		PP_5512	0.86	-1.4
2,600,484	+		PP_5512	0.86	+1.8
2,600,484	+		PP_5512	0.86	-0.4
2,600,484	+		PP_5512	0.86	-0.3
2,600,485	-		PP_5512	0.86	+1.1
2,600,485	-		PP_5512	0.86	+0.6
2,600,511	-				-1.7
2,600,512	+				-1.3
2,600,513	-				-2.3
2,600,572	+				+0.4
2,600,607	-				+1.3
2,600,632	+				-2.9
2,600,632	+				+1.7
2,600,633	-				+1.3
2,600,686	+		PP_2279	0.10	+0.5
2,600,686	+		PP_2279	0.10	-0.0
2,600,962	+		PP_2279	0.28	+0.1
2,600,963	-		PP_2279	0.28	-2.3
2,600,963	-		PP_2279	0.28	+0.3
2,600,963	-		PP_2279	0.28	+0.9
2,600,963	-		PP_2279	0.28	-0.1
2,600,992	+		PP_2279	0.30	+2.2
2,601,007	+		PP_2279	0.31	-2.7
2,601,008	-		PP_2279	0.31	+1.3
2,601,008	-		PP_2279	0.31	-0.4
2,601,102	-		PP_2279	0.37	+1.8
2,601,144	+		PP_2279	0.39	-3.0
2,601,144	+		PP_2279	0.39	+0.9
2,601,144	+		PP_2279	0.39	-1.8
2,601,145	-		PP_2279	0.39	-2.2
2,601,202	+		PP_2279	0.43	-0.2
2,601,202	+				+0.3
2,601,202	+		PP_2279	0.43	+0.5
2,601,202	+		PP_2279	0.43	-0.0
2,601,308	-		PP_2279	0.50	-1.9
2,601,308	-		PP_2279	0.50	+1.7
2,601,319	+		PP_2279	0.50	-0.1
2,601,331	+		PP_2279	0.51	+1.0
2,601,332	-		PP_2279	0.51	-0.2
2,601,332	-		PP_2279	0.51	-1.8
2,601,435	+		PP_2279	0.58	+1.9
2,601,644	-		PP_2279	0.71	-0.1
2,601,682	+				+0.3
2,601,682	+		PP_2279	0.74	+0.2
2,601,682	+		PP_2279	0.74	-2.4
2,601,683	-		PP_2279	0.74	+0.0
2,601,783	+		PP_2279	0.80	+0.3
2,601,783	+		PP_2279	0.80	+1.7
2,601,784	-		PP_2279	0.80	+0.1
2,601,907	+		PP_2279	0.88	+0.9
2,601,907	+		PP_2279	0.88	-0.1
2,601,908	-		PP_2279	0.88	+0.8
2,601,908	-		PP_2279	0.88	+2.9
2,601,908	-		PP_2279	0.88	-0.0
2,602,120	-		PP_2280	0.27	-1.5
2,602,120	-		PP_2280	0.27	+1.9
2,602,139	+		PP_2280	0.39	-2.0
2,602,139	+		PP_2280	0.39	-1.5
2,602,235	+				+1.3
2,602,367	+		PP_2281	0.17	+1.8
2,602,426	+		PP_2281	0.24	-1.7
2,602,489	-		PP_2281	0.32	+0.3
2,602,643	-		PP_2281	0.52	+0.2
2,602,643	-		PP_2281	0.52	+0.5
2,602,689	-		PP_2281	0.58	+0.1
2,602,840	+		PP_2281	0.77	-1.3
2,602,841	-		PP_2281	0.77	-0.3
2,602,944	+				+0.4