Strain Fitness in Pseudomonas putida KT2440 around PP_2276

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,596,923	+		PP_2273	0.85	+1.0
2,596,924	-		PP_2273	0.85	-1.7
2,596,956	-		PP_2273	0.87	+1.7
2,596,956	-		PP_2273	0.87	-0.3
2,596,956	-		PP_2273	0.87	+1.3
2,597,209	+				-2.4
2,597,210	-				-2.4
2,597,251	+		PP_2274	0.15	-0.3
2,597,316	-		PP_2274	0.45	+0.4
2,597,316	-		PP_2274	0.45	-2.0
2,597,316	-		PP_2274	0.45	+0.2
2,597,411	+		PP_2274	0.89	-2.3
2,597,411	+		PP_2274	0.89	+1.3
2,597,449	-				-1.1
2,597,658	-				-1.7
2,597,658	-				-2.2
2,597,675	+				+1.3
2,597,675	+				+0.2
2,597,676	-				+1.2
2,597,676	-				-0.1
2,597,679	-				+0.3
2,597,872	+		PP_2276	0.33	-3.2
2,597,872	+		PP_2276	0.33	+1.2
2,597,872	+		PP_2276	0.33	-3.0
2,597,873	-				+1.5
2,597,873	-		PP_2276	0.33	+2.1
2,597,873	-		PP_2276	0.33	+1.6
2,597,873	-		PP_2276	0.33	+1.1
2,597,886	+		PP_2276	0.35	+1.1
2,597,886	+		PP_2276	0.35	-1.7
2,597,887	-		PP_2276	0.35	+2.6
2,597,887	-		PP_2276	0.35	-2.4
2,598,057	+		PP_2276	0.57	+1.9
2,598,057	+		PP_2276	0.57	+0.1
2,598,057	+		PP_2276	0.57	+1.7
2,598,058	-		PP_2276	0.57	-1.0
2,598,058	-		PP_2276	0.57	+1.1
2,598,058	-		PP_2276	0.57	-1.9
2,598,058	-		PP_2276	0.57	-2.9
2,598,079	+		PP_2276	0.60	+1.9
2,598,079	+		PP_2276	0.60	-1.0
2,598,080	-		PP_2276	0.60	+1.8
2,598,080	-		PP_2276	0.60	+1.0
2,598,080	-		PP_2276	0.60	+0.8
2,598,130	+		PP_2276	0.67	-0.7
2,598,131	-		PP_2276	0.67	+1.0
2,598,142	+		PP_2276	0.69	+1.5
2,598,222	-		PP_2276	0.79	-1.7
2,598,348	-				-0.3
2,598,497	+				+1.6
2,598,498	-				+0.4
2,598,649	+				+1.6
2,598,741	+				-0.1
2,598,778	-				-2.7
2,598,778	-				+0.4
2,598,876	-		PP_2277	0.15	+2.6
2,598,881	-		PP_2277	0.16	+0.7
2,599,103	+		PP_2277	0.32	+2.3
2,599,104	-		PP_2277	0.32	-2.1
2,599,115	-		PP_2277	0.33	+1.9
2,599,156	-		PP_2277	0.36	+1.9
2,599,259	-		PP_2277	0.43	-0.7
2,599,273	+		PP_2277	0.44	+1.6
2,599,274	-		PP_2277	0.44	+0.5
2,599,351	+		PP_2277	0.50	+2.0