Strain Fitness in Pseudomonas putida KT2440 around PP_2267

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,589,048	+				+1.0
2,589,167	-				+1.3
2,589,215	-				-2.3
2,589,449	+				-0.6
2,589,449	+				-1.7
2,589,449	+				+1.9
2,589,450	-				-0.5
2,589,450	-				-2.5
2,589,504	+				-0.5
2,589,505	-				+1.1
2,589,522	-				-0.6
2,589,522	-				+0.8
2,589,605	-				-0.3
2,589,605	-				-0.1
2,589,605	-				+0.5
2,589,605	-				+0.4
2,589,659	-				+0.4
2,589,702	-		PP_5507	0.24	-0.3
2,589,765	+		PP_5507	0.49	-0.5
2,589,766	-		PP_5507	0.49	-0.5
2,589,766	-		PP_5507	0.49	+1.1
2,589,766	-		PP_5507	0.49	+1.3
2,589,821	+		PP_5507	0.71	-2.2
2,589,821	+		PP_5507	0.71	+0.8
2,589,822	-		PP_5507	0.71	+0.0
2,589,926	+				+0.6
2,589,927	+				-0.0
2,589,928	-				+1.1
2,589,949	+				-1.2
2,589,950	-				-2.0
2,590,041	+		PP_2267	0.13	-2.5
2,590,041	+		PP_2267	0.13	+0.7
2,590,041	+		PP_2267	0.13	+2.7
2,590,041	+		PP_2267	0.13	-0.7
2,590,042	-		PP_2267	0.13	+0.1
2,590,184	-		PP_2267	0.34	-2.5
2,590,184	-		PP_2267	0.34	+1.9
2,590,407	+		PP_2267	0.67	+0.9
2,590,408	-		PP_2267	0.67	-0.6
2,590,408	-		PP_2267	0.67	-2.8
2,590,408	-		PP_2267	0.67	+0.9
2,590,618	-				+0.6
2,590,669	+				+1.0
2,590,759	+		PP_2268	0.24	+0.3
2,591,080	+				-2.0
2,591,128	-				-1.7
2,591,296	+		PP_2269	0.47	-0.5
2,591,297	-		PP_2269	0.47	+0.6
2,591,297	-		PP_2269	0.47	+2.3
2,591,306	+		PP_2269	0.49	-0.5
2,591,307	-		PP_2269	0.49	+1.6
2,591,307	-		PP_2269	0.49	-1.0
2,591,508	-				-0.3
2,591,531	-				+0.3