Strain Fitness in Pseudomonas putida KT2440 around PP_2259

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,575,649	+		PP_2258	0.49	-1.3
2,575,649	+		PP_2258	0.49	-0.1
2,575,649	+		PP_2258	0.49	-2.3
2,575,649	+		PP_2258	0.49	+0.3
2,575,649	+		PP_2258	0.49	+0.4
2,575,649	+		PP_2258	0.49	-1.7
2,575,649	+		PP_2258	0.49	-0.5
2,575,650	-		PP_2258	0.49	+2.1
2,575,650	-		PP_2258	0.49	-0.9
2,575,650	-		PP_2258	0.49	+0.3
2,575,650	-		PP_2258	0.49	-0.7
2,575,680	-		PP_2258	0.51	+0.7
2,575,778	+		PP_2258	0.56	-2.2
2,575,782	-		PP_2258	0.57	-1.4
2,575,816	-		PP_2258	0.59	-0.1
2,576,003	-				+0.3
2,576,003	-		PP_2258	0.70	-2.7
2,576,208	-		PP_2258	0.82	-2.0
2,576,222	+		PP_2258	0.83	+3.3
2,576,641	+				-0.2
2,576,641	+				-0.2
2,576,642	-				-1.2
2,576,642	-				-3.2
2,576,660	+				+0.1
2,576,832	+		PP_2259	0.12	-3.0
2,576,833	-		PP_2259	0.12	+1.0
2,576,833	-		PP_2259	0.12	-2.4
2,577,023	-		PP_2259	0.23	-0.4
2,577,023	-		PP_2259	0.23	-2.3
2,577,151	-				+2.9
2,577,284	-		PP_2259	0.37	-3.3
2,577,447	+		PP_2259	0.47	-0.2
2,577,462	+		PP_2259	0.47	-0.7
2,577,462	+		PP_2259	0.47	-2.7
2,577,462	+		PP_2259	0.47	-0.0
2,577,463	-		PP_2259	0.48	-1.0
2,577,618	+		PP_2259	0.56	-1.9
2,577,657	+		PP_2259	0.58	+0.7
2,577,872	-		PP_2259	0.71	-3.3
2,577,886	-		PP_2259	0.71	+0.7
2,577,949	+		PP_2259	0.75	-1.3
2,577,950	-		PP_2259	0.75	-2.4
2,577,950	-		PP_2259	0.75	-1.5
2,578,149	+		PP_2259	0.86	-0.7
2,578,157	-		PP_2259	0.87	-3.5
2,578,157	-		PP_2259	0.87	+0.3
2,578,183	+		PP_2259	0.88	+0.2
2,578,183	+		PP_2259	0.88	-1.6
2,578,183	+		PP_2259	0.88	-0.3
2,578,183	+		PP_2259	0.88	-1.2
2,578,192	-		PP_2259	0.89	+0.9
2,578,828	+		PP_2260	0.22	-1.3
2,578,846	+		PP_2260	0.23	+2.3
2,579,083	+		PP_2260	0.45	-2.0
2,579,084	-		PP_2260	0.45	+0.0
2,579,221	-				+1.3
2,579,252	-		PP_2260	0.60	+0.0
2,579,252	-		PP_2260	0.60	+0.1
2,579,323	-		PP_2260	0.67	-2.8
2,579,323	-		PP_2260	0.67	+1.9
2,579,340	-		PP_2260	0.68	-0.3