Strain Fitness in Pseudomonas putida KT2440 around PP_2250

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,566,107	+		PP_2249	0.56	-1.7
2,566,107	+		PP_2249	0.56	-0.9
2,566,108	-		PP_2249	0.56	+1.4
2,566,140	+		PP_2249	0.58	+0.9
2,566,141	-		PP_2249	0.58	+1.5
2,566,252	-		PP_2249	0.64	-2.0
2,566,252	-		PP_2249	0.64	+1.7
2,566,285	+		PP_2249	0.65	-0.2
2,566,527	+		PP_2249	0.78	+0.2
2,566,611	+		PP_2249	0.82	+0.3
2,566,804	+				-1.3
2,566,804	+				+0.1
2,566,805	-				-1.3
2,566,805	-				-2.3
2,566,805	-				-0.8
2,566,818	+				+1.5
2,566,818	+				+2.5
2,566,819	-				-0.9
2,566,819	-				+1.1
2,566,828	-				+0.1
2,566,828	-				+0.7
2,567,121	-				+1.0
2,567,150	+		PP_2250	0.11	+2.2
2,567,150	+		PP_2250	0.11	+0.2
2,567,150	+		PP_2250	0.11	+1.7
2,567,379	-		PP_2250	0.38	+0.3
2,567,421	+		PP_2250	0.42	+0.4
2,567,487	+		PP_2250	0.50	-0.1
2,567,579	+		PP_2250	0.60	+0.7
2,567,579	+		PP_2250	0.60	+3.1
2,567,579	+		PP_2250	0.60	+0.0
2,567,580	-		PP_2250	0.60	-1.3
2,567,580	-		PP_2250	0.60	-2.8
2,567,580	-				+0.3
2,567,583	+		PP_2250	0.61	+0.3
2,567,583	+		PP_2250	0.61	+0.8
2,567,583	+		PP_2250	0.61	+1.9
2,567,583	+		PP_2250	0.61	+0.4
2,567,584	-		PP_2250	0.61	-0.0
2,567,584	-		PP_2250	0.61	+0.3
2,568,057	+				-1.3
2,568,057	+				+0.1
2,568,058	-				-0.3
2,568,070	-				+2.3
2,568,111	+		PP_2251	0.19	+0.1
2,568,111	+		PP_2251	0.19	+1.9
2,568,112	-		PP_2251	0.19	-0.9
2,568,192	+		PP_2251	0.38	+0.6
2,568,192	+		PP_2251	0.38	+1.1
2,568,192	+		PP_2251	0.38	-1.2
2,568,192	+		PP_2251	0.38	-3.3
2,568,192	+		PP_2251	0.38	+1.2
2,568,193	-		PP_2251	0.38	+1.3
2,568,210	+		PP_2251	0.42	+0.4
2,568,298	-		PP_2251	0.62	+1.5
2,568,387	+		PP_2251	0.83	+1.1
2,568,388	-		PP_2251	0.83	-0.3
2,568,388	-		PP_2251	0.83	+1.2
2,568,388	-		PP_2251	0.83	-2.4
2,568,400	-		PP_2251	0.86	+0.7
2,568,459	+				-1.4
2,568,459	+				+1.5
2,568,459	+				-0.2
2,568,460	-				+0.3
2,568,460	-				+2.3
2,568,499	+				+0.2
2,568,499	+				+0.7
2,568,499	+				+0.2
2,568,499	+				-1.0
2,568,500	-				-0.7
2,568,604	+		PP_2252	0.10	+0.3
2,568,604	+		PP_2252	0.10	+2.0
2,568,604	+		PP_2252	0.10	-0.1
2,568,605	-		PP_2252	0.10	+1.9
2,568,605	-		PP_2252	0.10	-0.1
2,568,607	+		PP_2252	0.10	-3.0
2,568,607	+		PP_2252	0.10	+1.1
2,568,607	+		PP_2252	0.10	-1.3
2,568,607	+		PP_2252	0.10	+1.8
2,568,607	+		PP_2252	0.10	-1.5
2,568,608	-		PP_2252	0.10	+2.0
2,568,608	-		PP_2252	0.10	-2.5
2,568,608	-		PP_2252	0.10	+0.2
2,568,608	-		PP_2252	0.10	-1.0
2,568,608	-		PP_2252	0.10	+1.0
2,568,608	-		PP_2252	0.10	+2.0
2,568,608	-		PP_2252	0.10	+1.5
2,568,608	-		PP_2252	0.10	+0.3
2,568,608	-		PP_2252	0.10	+1.8