Strain Fitness in Pseudomonas putida KT2440 around PP_2205

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,509,131	-				+0.4
2,509,241	+		PP_2204	0.13	-0.3
2,509,242	-		PP_2204	0.13	-0.2
2,509,269	-		PP_2204	0.16	-0.9
2,509,340	+		PP_2204	0.24	+0.3
2,509,369	+		PP_2204	0.27	-2.1
2,509,392	+		PP_2204	0.30	-1.5
2,509,393	-		PP_2204	0.30	-1.7
2,509,397	+		PP_2204	0.30	-0.6
2,509,442	+		PP_2204	0.35	+1.3
2,509,657	-		PP_2204	0.60	-2.8
2,510,259	+		PP_2205	0.15	-1.1
2,510,259	+		PP_2205	0.15	-0.7
2,510,259	+		PP_2205	0.15	-2.3
2,510,259	+		PP_2205	0.15	-1.3
2,510,259	+		PP_2205	0.15	+0.4
2,510,326	+		PP_2205	0.19	+0.3
2,510,326	+		PP_2205	0.19	-1.0
2,510,327	-		PP_2205	0.19	-1.3
2,510,442	-		PP_2205	0.25	-0.3
2,510,442	-		PP_2205	0.25	+0.6
2,510,758	-		PP_2205	0.44	+2.5
2,510,793	+		PP_2205	0.46	+0.9
2,510,794	-		PP_2205	0.46	-1.9
2,510,794	-		PP_2205	0.46	-3.4
2,510,902	-		PP_2205	0.52	-0.3
2,511,000	+		PP_2205	0.58	-1.3
2,511,000	+		PP_2205	0.58	+0.9
2,511,000	+		PP_2205	0.58	-0.8
2,511,000	+		PP_2205	0.58	-3.0
2,511,000	+		PP_2205	0.58	+0.1
2,511,001	-		PP_2205	0.58	-1.3
2,511,001	-		PP_2205	0.58	-0.7
2,511,006	+		PP_2205	0.58	-2.9
2,511,007	-		PP_2205	0.58	-2.3
2,511,007	-		PP_2205	0.58	-1.7
2,511,147	+		PP_2205	0.66	-2.6
2,511,148	-		PP_2205	0.66	-0.0
2,511,238	-		PP_2205	0.71	-1.1
2,511,282	+		PP_2205	0.74	+0.6
2,511,283	-		PP_2205	0.74	-3.0
2,511,285	-		PP_2205	0.74	-2.4
2,511,327	+		PP_2205	0.77	+0.9
2,511,327	+		PP_2205	0.77	-0.7
2,511,327	+		PP_2205	0.77	-0.2
2,511,327	+		PP_2205	0.77	+0.6
2,511,328	-		PP_2205	0.77	+0.3
2,511,363	+		PP_2205	0.79	+0.5
2,511,364	-		PP_2205	0.79	-0.1
2,511,553	+		PP_2205	0.90	-0.4
2,511,706	+				-2.1
2,511,751	-				-1.5
2,511,799	+				+0.3
2,511,799	+				-1.3
2,511,799	+				+0.4
2,511,799	+				-0.2
2,511,800	-				+0.9
2,511,800	-				-2.8
2,511,855	+				-0.1
2,511,888	+				-1.9
2,511,888	+				-2.6
2,511,889	-				-2.7
2,511,889	-				-0.0
2,511,967	-		PP_2206	0.12	+1.2
2,512,110	+		PP_2206	0.23	-0.8
2,512,111	-		PP_2206	0.24	+0.8
2,512,119	+		PP_2206	0.24	+1.7
2,512,120	-		PP_2206	0.24	-3.2
2,512,269	+				+0.3
2,512,269	+		PP_2206	0.36	-2.6
2,512,270	-		PP_2206	0.36	-0.7
2,512,270	-		PP_2206	0.36	-2.5
2,512,271	+		PP_2206	0.36	-1.0
2,512,374	+		PP_2206	0.44	-0.0
2,512,375	-		PP_2206	0.44	+0.3
2,512,375	-		PP_2206	0.44	-0.1
2,512,375	-		PP_2206	0.44	+1.3
2,512,375	-		PP_2206	0.44	+0.3
2,512,375	-		PP_2206	0.44	-0.1
2,512,534	-				+1.3
2,512,590	+		PP_2206	0.61	+0.3
2,512,617	+		PP_2206	0.63	-2.1
2,512,617	+		PP_2206	0.63	+0.5