Strain Fitness in Pseudomonas putida KT2440 around PP_2199

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,504,465	-		PP_2198	0.22	+1.4
2,504,544	+		PP_2198	0.29	-2.6
2,504,545	-		PP_2198	0.29	-0.0
2,504,553	+		PP_2198	0.30	-0.4
2,504,554	-		PP_2198	0.30	+0.7
2,504,554	-		PP_2198	0.30	+0.3
2,504,554	-		PP_2198	0.30	-2.5
2,504,719	-		PP_2198	0.44	+0.1
2,504,798	+		PP_2198	0.51	-1.7
2,504,885	+		PP_2198	0.59	-3.0
2,504,886	-		PP_2198	0.59	-2.8
2,504,886	-		PP_2198	0.59	+1.3
2,504,926	+		PP_2198	0.62	-2.0
2,504,926	+		PP_2198	0.62	-2.0
2,504,927	-		PP_2198	0.62	+0.3
2,504,927	-		PP_2198	0.62	-0.3
2,504,927	-		PP_2198	0.62	+0.0
2,504,927	-		PP_2198	0.62	-3.3
2,504,927	-		PP_2198	0.62	+2.3
2,504,927	-		PP_2198	0.62	+1.1
2,504,927	-		PP_2198	0.62	-0.7
2,504,927	-		PP_2198	0.62	-0.1
2,504,927	-		PP_2198	0.62	+1.3
2,504,991	+		PP_2198	0.68	-0.5
2,504,991	+		PP_2198	0.68	-1.5
2,504,991	+		PP_2198	0.68	-1.9
2,504,991	+		PP_2198	0.68	+0.6
2,504,992	-		PP_2198	0.68	+2.2
2,505,024	+		PP_2198	0.71	-2.4
2,505,025	-		PP_2198	0.71	-0.7
2,505,025	-		PP_2198	0.71	-0.8
2,505,091	+		PP_2198	0.77	+0.9
2,505,091	+		PP_2198	0.77	+2.1
2,505,092	-		PP_2198	0.77	-2.4
2,505,119	+		PP_2198	0.79	-2.9
2,505,130	-		PP_2198	0.80	-2.8
2,505,172	+		PP_2198	0.84	-0.1
2,505,297	+				-0.9
2,505,297	+				+0.3
2,505,298	-				-0.8
2,505,298	-				-3.0
2,505,298	-				-0.7
2,505,303	+				-0.5
2,505,303	+				+0.7
2,505,303	+				-0.7
2,505,303	+				+0.6
2,505,304	-				+0.3
2,505,304	-				-2.4
2,505,304	-				-2.4
2,505,307	+				+0.1
2,505,308	-				-2.8
2,505,308	-				-1.5
2,505,308	-				-2.7
2,505,335	-				-2.4
2,505,425	+				+1.3
2,505,425	+				-0.8
2,505,425	+				-0.1
2,505,426	-				-3.1
2,505,452	+				+0.1
2,505,542	+		PP_2199	0.13	+0.5
2,505,542	+		PP_2199	0.13	-0.3
2,505,543	-		PP_2199	0.13	-1.3
2,505,543	-		PP_2199	0.13	-3.0
2,505,801	+		PP_2199	0.36	-1.3
2,505,801	+		PP_2199	0.36	-2.8
2,505,802	-		PP_2199	0.36	+1.3
2,505,802	-		PP_2199	0.36	-0.0
2,505,927	+		PP_2199	0.48	-2.4
2,505,928	-		PP_2199	0.48	-2.1
2,506,078	+		PP_2199	0.61	-0.6
2,506,212	+		PP_2199	0.73	+0.4
2,506,256	-		PP_2199	0.77	-1.7
2,506,373	+		PP_2199	0.88	+0.7
2,506,374	-		PP_2199	0.88	-1.9
2,506,374	-		PP_2199	0.88	-0.4
2,506,394	+		PP_2199	0.90	+0.3
2,506,394	+		PP_2199	0.90	-0.7
2,506,428	-				-0.7
2,506,440	-				-3.0
2,506,455	-				+2.7
2,506,540	-				+1.3
2,506,540	-				-0.2
2,506,557	+				+0.7
2,506,558	-				+0.3
2,506,558	-				+0.7
2,506,559	+				-2.9
2,506,559	+				-3.0
2,506,587	+				+0.7
2,506,695	+		PP_2200	0.30	+1.1
2,506,695	+		PP_2200	0.30	-0.4
2,506,696	-		PP_2200	0.30	+1.5
2,506,696	-		PP_2200	0.30	-0.6
2,506,703	+		PP_2200	0.31	+0.8
2,506,703	+		PP_2200	0.31	-1.1
2,506,704	-		PP_2200	0.31	+0.3
2,506,704	-		PP_2200	0.31	+0.7
2,506,704	-		PP_2200	0.31	-0.2
2,506,704	-		PP_2200	0.31	-0.9
2,506,837	-		PP_2200	0.54	-2.3
2,506,873	-		PP_2200	0.60	-0.3
2,506,873	-		PP_2200	0.60	-3.4
2,506,988	+		PP_2200	0.80	+0.7
2,507,100	+				+1.1
2,507,101	-				-2.9
2,507,138	-				+0.1
2,507,147	+				+1.2
2,507,147	+				+1.3
2,507,148	-				-0.4
2,507,311	+		PP_2201	0.14	+0.2
2,507,311	+		PP_2201	0.14	-0.9
2,507,311	+		PP_2201	0.14	-0.1
2,507,311	+		PP_2201	0.14	-1.9
2,507,311	+		PP_2201	0.14	-2.1
2,507,312	-				+0.3
2,507,312	-		PP_2201	0.14	-2.5
2,507,331	+		PP_2201	0.16	+0.6
2,507,332	-		PP_2201	0.16	-2.8
2,507,332	-		PP_2201	0.16	-2.3
2,507,426	-		PP_2201	0.25	-0.0
2,507,453	-		PP_2201	0.28	-1.1
2,507,453	-		PP_2201	0.28	+0.3