Strain Fitness in Pseudomonas putida KT2440 around PP_2194

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,499,660	+		PP_2193	0.64	+1.0
2,499,684	+		PP_2193	0.65	-2.4
2,499,685	-		PP_2193	0.65	-0.5
2,499,801	+		PP_2193	0.69	+0.7
2,499,802	-		PP_2193	0.69	-1.6
2,499,834	+		PP_2193	0.71	-3.3
2,499,835	-		PP_2193	0.71	-3.7
2,499,835	-		PP_2193	0.71	-2.8
2,499,870	+		PP_2193	0.72	-0.1
2,499,906	+		PP_2193	0.74	+0.9
2,499,907	-		PP_2193	0.74	-1.7
2,499,909	+		PP_2193	0.74	-3.1
2,500,023	+		PP_2193	0.78	+0.3
2,500,024	-		PP_2193	0.78	+1.2
2,500,026	+		PP_2193	0.78	+0.6
2,500,026	+		PP_2193	0.78	-2.0
2,500,026	+		PP_2193	0.78	+2.2
2,500,026	+		PP_2193	0.78	-0.7
2,500,026	+		PP_2193	0.78	+0.4
2,500,026	+		PP_2193	0.78	-2.2
2,500,026	+		PP_2193	0.78	+0.4
2,500,026	+		PP_2193	0.78	-3.6
2,500,027	-		PP_2193	0.79	+1.1
2,500,027	-		PP_2193	0.79	+1.3
2,500,027	-		PP_2193	0.79	+1.9
2,500,228	-		PP_2193	0.87	+1.1
2,500,348	-				-2.7
2,500,432	-				-1.3
2,500,432	-				+1.2
2,500,432	-				-1.8
2,500,432	-				-0.8
2,500,479	+				+0.9
2,500,491	+				+0.3
2,500,491	+				-0.9
2,500,492	-				+0.7
2,500,497	+				+2.0
2,500,497	+				+0.3
2,500,497	+				+1.2
2,500,498	-				-2.1
2,500,498	-				+1.3
2,500,498	-				-2.7
2,500,498	-				+2.2
2,500,498	-				+1.0
2,500,503	+				-1.3
2,500,504	-				-0.6
2,500,524	+				-2.4
2,500,524	+				-0.1
2,500,525	-				-1.3
2,500,525	-				-1.5
2,500,527	-				-2.6
2,500,527	-				+1.1
2,500,527	-				-3.1
2,500,549	-				-1.7
2,500,611	+				-1.3
2,500,611	+				-2.3
2,500,611	+				+0.9
2,500,611	+				-3.2
2,500,612	-				-1.6
2,500,612	-				+0.0
2,500,612	-				+1.0
2,500,699	-		PP_2194	0.14	-1.1
2,500,744	+		PP_2194	0.19	-1.3
2,500,745	-		PP_2194	0.19	+1.2
2,500,751	+		PP_2194	0.19	+1.9
2,500,752	-		PP_2194	0.20	-0.5
2,500,936	+		PP_2194	0.40	+0.8
2,500,970	-		PP_2194	0.44	+1.8
2,501,011	+		PP_2194	0.49	+2.4
2,501,012	-		PP_2194	0.49	-2.3
2,501,163	+		PP_2194	0.66	+1.7
2,501,164	-		PP_2194	0.66	+0.4
2,501,164	-		PP_2194	0.66	-0.7
2,501,164	-		PP_2194	0.66	+0.7
2,501,256	+		PP_2194	0.76	+1.3
2,501,412	+				-0.9
2,501,469	+				-0.2
2,501,470	-				+1.2
2,501,646	+				-1.1
2,501,661	+				-1.3
2,501,706	+		PP_2195	0.13	+1.5
2,501,706	+				+0.3
2,501,706	+		PP_2195	0.13	-0.8
2,501,706	+		PP_2195	0.13	+0.8
2,501,707	-		PP_2195	0.13	-0.4
2,501,983	+		PP_2195	0.39	+1.1
2,501,984	-		PP_2195	0.39	-0.2
2,502,004	+		PP_2195	0.41	-2.1
2,502,005	-		PP_2195	0.41	-1.2
2,502,005	-		PP_2195	0.41	+0.1
2,502,117	+		PP_2195	0.51	-0.6
2,502,118	-		PP_2195	0.51	+0.7
2,502,135	+		PP_2195	0.53	-3.3
2,502,136	-		PP_2195	0.53	+0.0
2,502,136	-		PP_2195	0.53	-0.3
2,502,204	+		PP_2195	0.59	-0.1
2,502,204	+		PP_2195	0.59	+0.2
2,502,204	+		PP_2195	0.59	+2.1
2,502,204	+		PP_2195	0.59	+1.3
2,502,205	-		PP_2195	0.59	+0.0
2,502,205	-		PP_2195	0.59	-1.7
2,502,205	-		PP_2195	0.59	+2.3
2,502,268	-		PP_2195	0.65	+1.9
2,502,268	-		PP_2195	0.65	+0.4
2,502,333	+		PP_2195	0.71	-1.6
2,502,333	+		PP_2195	0.71	+1.0
2,502,333	+		PP_2195	0.71	+1.3
2,502,333	+		PP_2195	0.71	+0.2
2,502,334	-		PP_2195	0.71	-0.5
2,502,334	-		PP_2195	0.71	+0.7