Strain Fitness in Pseudomonas putida KT2440 around PP_2185

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,489,673	+		PP_2184	0.42	+1.2
2,489,673	+		PP_2184	0.42	-3.1
2,489,673	+		PP_2184	0.42	+0.8
2,489,674	-		PP_2184	0.42	-1.9
2,489,674	-		PP_2184	0.42	-0.8
2,489,674	-		PP_2184	0.42	+0.8
2,489,674	-		PP_2184	0.42	-1.1
2,489,674	-		PP_2184	0.42	-0.5
2,489,674	-		PP_2184	0.42	-0.9
2,489,674	-		PP_2184	0.42	-0.2
2,489,675	+		PP_2184	0.43	-2.6
2,489,675	+		PP_2184	0.43	-0.7
2,489,675	+		PP_2184	0.43	-0.5
2,489,675	+		PP_2184	0.43	-1.8
2,489,675	+		PP_2184	0.43	-1.4
2,489,675	+		PP_2184	0.43	-0.5
2,489,675	+		PP_2184	0.43	-0.3
2,489,675	+		PP_2184	0.43	+1.2
2,489,675	+		PP_2184	0.43	-0.6
2,489,675	+		PP_2184	0.43	-1.2
2,489,675	+		PP_2184	0.43	+0.5
2,489,675	+		PP_2184	0.43	-2.5
2,489,675	+		PP_2184	0.43	-0.2
2,489,675	+		PP_2184	0.43	-0.6
2,489,675	+		PP_2184	0.43	+0.4
2,489,675	+		PP_2184	0.43	+0.4
2,489,675	+		PP_2184	0.43	+1.6
2,489,676	-		PP_2184	0.43	-0.2
2,489,676	-		PP_2184	0.43	-0.1
2,489,676	-		PP_2184	0.43	-1.1
2,489,676	-		PP_2184	0.43	-0.6
2,489,676	-		PP_2184	0.43	-1.4
2,489,676	-		PP_2184	0.43	+0.8
2,489,676	-		PP_2184	0.43	+0.8
2,489,676	-		PP_2184	0.43	-2.8
2,489,676	-		PP_2184	0.43	+1.0
2,489,676	-		PP_2184	0.43	+0.2
2,489,676	-		PP_2184	0.43	-0.9
2,489,679	+		PP_2184	0.43	+1.0
2,489,679	+		PP_2184	0.43	+0.6
2,489,679	+		PP_2184	0.43	-0.4
2,489,679	+		PP_2184	0.43	-1.2
2,489,679	+		PP_2184	0.43	-1.5
2,489,679	+		PP_2184	0.43	-0.5
2,489,679	+		PP_2184	0.43	-2.1
2,489,679	+		PP_2184	0.43	+1.2
2,489,680	-		PP_2184	0.43	+1.0
2,489,680	-		PP_2184	0.43	-0.7
2,489,680	-		PP_2184	0.43	-1.0
2,489,680	-		PP_2184	0.43	-1.7
2,489,680	-		PP_2184	0.43	+0.7
2,489,680	-		PP_2184	0.43	-1.4
2,489,680	-				+0.4
2,489,680	-		PP_2184	0.43	+0.1
2,489,680	-		PP_2184	0.43	+0.9
2,489,680	-		PP_2184	0.43	-1.1
2,489,694	+		PP_2184	0.44	+0.5
2,489,752	-		PP_2184	0.47	-2.9
2,489,768	-		PP_2184	0.48	-1.9
2,489,822	+		PP_2184	0.52	-0.9
2,489,822	+		PP_2184	0.52	+2.0
2,489,823	-		PP_2184	0.52	-2.4
2,489,949	-		PP_2184	0.60	+0.1
2,490,118	-		PP_2184	0.71	-0.8
2,490,129	-		PP_2184	0.71	+1.6
2,490,188	-		PP_2184	0.75	-0.2
2,490,219	+		PP_2184	0.77	-1.2
2,490,220	-		PP_2184	0.77	-2.5
2,490,281	+		PP_2184	0.81	+0.4
2,490,281	+		PP_2184	0.81	-1.9
2,490,501	-				+0.8
2,490,510	+				-0.9
2,490,534	+				+0.7
2,490,535	-				-0.0
2,490,535	-				-0.2
2,490,535	-				-1.8
2,490,607	+				+0.2
2,490,917	+		PP_2185	0.12	-1.9
2,490,917	+		PP_2185	0.12	+0.5
2,490,918	-		PP_2185	0.12	+0.2
2,490,918	-		PP_2185	0.12	-0.5
2,490,918	-		PP_2185	0.12	+0.5
2,491,070	+		PP_2185	0.17	-2.3
2,491,071	-		PP_2185	0.17	-1.3
2,491,079	+		PP_2185	0.17	-1.4
2,491,141	+		PP_2185	0.20	-0.5
2,491,318	+		PP_2185	0.26	+0.6
2,491,319	-		PP_2185	0.26	-0.6
2,491,551	-		PP_2185	0.34	-1.4
2,491,551	-		PP_2185	0.34	+1.0
2,491,551	-		PP_2185	0.34	+0.6
2,491,586	+		PP_2185	0.35	-3.1
2,491,643	+		PP_2185	0.37	-1.2
2,491,643	+		PP_2185	0.37	-1.5
2,491,644	-		PP_2185	0.37	-2.5
2,492,169	-		PP_2185	0.55	-2.8
2,492,195	+		PP_2185	0.56	+0.5
2,492,195	+		PP_2185	0.56	+1.6
2,492,195	+		PP_2185	0.56	+0.7
2,492,195	+		PP_2185	0.56	-0.4
2,492,199	-		PP_2185	0.56	+0.7
2,492,199	-		PP_2185	0.56	+0.6
2,492,234	-		PP_2185	0.57	-2.5
2,492,295	+		PP_2185	0.60	-0.9
2,492,752	+		PP_2185	0.75	-2.2
2,492,752	+		PP_2185	0.75	-3.3
2,492,793	-		PP_2185	0.77	-0.9
2,492,852	-		PP_2185	0.79	+0.6
2,492,852	-		PP_2185	0.79	+3.1
2,492,858	+		PP_2185	0.79	-2.8
2,492,858	+		PP_2185	0.79	-0.1
2,492,858	+		PP_2185	0.79	-0.2
2,492,859	-		PP_2185	0.79	-0.9
2,493,054	-		PP_2185	0.86	-2.1
2,493,242	+				-0.8
2,493,242	+				-0.7
2,493,242	+				+1.5
2,493,243	-				+1.4
2,493,243	-				+1.0
2,493,502	+		PP_2186	0.22	-2.5
2,493,502	+		PP_2186	0.22	-0.2
2,493,503	-				+0.4
2,493,503	-		PP_2186	0.23	+0.1
2,493,503	-		PP_2186	0.23	+0.7
2,493,659	-				+0.5
2,493,749	+				+0.7
2,493,750	-				-0.6
2,493,764	+				-2.4
2,493,765	-				-3.1
2,493,772	-				+1.4
2,493,855	+				+3.0
2,493,855	+				-2.7
2,493,856	-				+0.7
2,493,872	+		PP_2187	0.11	-0.1
2,493,950	+		PP_2187	0.20	-0.0
2,494,012	+		PP_2187	0.28	-3.0
2,494,392	+		PP_2187	0.72	+0.8
2,494,392	+		PP_2187	0.72	-2.1
2,494,393	-		PP_2187	0.72	+0.4
2,494,393	-		PP_2187	0.72	-2.0
2,494,393	-		PP_2187	0.72	+0.9
2,494,393	-		PP_2187	0.72	-0.6