Strain Fitness in Pseudomonas putida KT2440 around PP_2177

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,481,628	+		PP_2176	0.20	-2.1
2,481,628	+		PP_2176	0.20	+0.3
2,481,628	+		PP_2176	0.20	-0.1
2,481,897	+		PP_2176	0.48	-2.7
2,481,957	-		PP_2176	0.55	+0.6
2,481,962	+		PP_2176	0.55	-0.9
2,481,962	+		PP_2176	0.55	+0.6
2,482,209	-		PP_2176	0.82	-2.2
2,482,209	-		PP_2176	0.82	-1.3
2,482,298	+				+2.0
2,482,298	+				+0.9
2,482,298	+				-1.4
2,482,299	-				+1.4
2,482,521	+				-0.7
2,482,592	-				+1.1
2,482,752	-		PP_2177	0.36	-1.9
2,482,758	-		PP_2177	0.37	-0.7
2,482,758	-		PP_2177	0.37	-2.9
2,482,758	-		PP_2177	0.37	-2.5
2,482,758	-		PP_2177	0.37	-0.9
2,482,821	-		PP_2177	0.48	+1.1
2,482,925	+		PP_2177	0.67	-2.9
2,482,926	-		PP_2177	0.67	-2.6
2,482,926	-		PP_2177	0.67	-0.8
2,483,058	-				+1.1
2,483,128	+				-0.6
2,483,129	-				-0.7
2,483,205	-				-0.5
2,483,243	+				-1.2
2,483,579	+		PP_2178	0.33	-2.7
2,483,579	+		PP_2178	0.33	-2.8
2,483,580	-		PP_2178	0.33	-1.8
2,483,580	-		PP_2178	0.33	+2.1
2,483,618	+		PP_2178	0.36	-0.1
2,483,619	-		PP_2178	0.36	+0.7
2,483,857	+		PP_2178	0.54	-2.3
2,483,903	+		PP_2178	0.57	-1.2
2,483,904	-		PP_2178	0.57	+0.7
2,483,904	-		PP_2178	0.57	-1.6
2,483,949	-		PP_2178	0.60	-0.3
2,483,965	+		PP_2178	0.62	+2.4
2,483,966	-		PP_2178	0.62	-0.5
2,484,072	-		PP_2178	0.70	-0.2