Strain Fitness in Pseudomonas putida KT2440 around PP_2172

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,477,543	+		PP_2171	0.53	-1.5
2,477,552	-		PP_2171	0.55	-1.6
2,477,589	+		PP_2171	0.60	+1.8
2,477,590	-		PP_2171	0.61	+0.6
2,477,590	-		PP_2171	0.61	+0.3
2,477,728	+		PP_2171	0.83	+0.0
2,477,848	+				-1.4
2,477,848	+				+0.2
2,477,849	-				+0.4
2,477,891	-				+1.9
2,477,891	-				+1.3
2,477,891	-				-1.4
2,477,917	-				-0.2
2,477,917	-				+1.8
2,477,984	+				+0.5
2,478,026	+				-1.6
2,478,027	-				-2.3
2,478,116	+				-1.2
2,478,117	-				+3.3
2,478,117	-				+0.3
2,478,117	-				-1.2
2,478,117	-				-0.7
2,478,179	-				-1.8
2,478,268	+				-2.5
2,478,268	+				+1.0
2,478,269	-				-0.7
2,478,375	+		PP_2172	0.16	+0.7
2,478,375	+		PP_2172	0.16	-2.3
2,478,495	+		PP_2172	0.43	+0.6
2,478,495	+		PP_2172	0.43	+2.7
2,478,495	+		PP_2172	0.43	+1.6
2,478,571	+		PP_2172	0.60	-0.2
2,478,572	-		PP_2172	0.60	+0.3
2,478,776	+				-1.0
2,478,777	-				-0.8
2,478,929	-				+2.0
2,478,929	-				-1.2
2,478,948	+				+1.4
2,478,948	+				-2.2
2,478,948	+				-0.0
2,478,948	+				+0.6
2,478,948	+				-0.5
2,478,949	-				+0.2
2,478,949	-				+0.6
2,478,949	-				+0.6
2,478,980	+				-0.7
2,479,034	+				+1.4
2,479,034	+				-1.6
2,479,034	+				-1.5
2,479,034	+				-2.0
2,479,035	-				+0.1
2,479,035	-				+1.4
2,479,035	-				-1.9
2,479,042	+				-0.3
2,479,042	+				-0.9
2,479,043	-				-0.0
2,479,043	-				+0.8
2,479,082	-				+1.0
2,479,110	+				-2.8
2,479,110	+				-3.3
2,479,111	-				+1.1
2,479,111	-				-3.1
2,479,114	+				-3.7
2,479,114	+				+0.8
2,479,114	+				-0.5
2,479,114	+				+3.2
2,479,115	-				+0.2
2,479,115	-				-0.5
2,479,115	-				+0.7
2,479,115	-				-0.5
2,479,115	-				-2.2
2,479,193	+				-3.7
2,479,193	+				-3.1
2,479,208	+				-2.3
2,479,208	+				-1.6
2,479,208	+				+1.2
2,479,208	+				+2.4
2,479,208	+				+2.4
2,479,209	-				-3.0
2,479,209	-				-1.1
2,479,247	+				-0.1
2,479,248	-				+1.4
2,479,248	-				+1.3
2,479,320	-		PP_2173	0.15	-1.2
2,479,320	-		PP_2173	0.15	+0.7
2,479,332	+		PP_2173	0.16	+0.3
2,479,333	-		PP_2173	0.16	-3.0
2,479,333	-		PP_2173	0.16	+0.1
2,479,347	-		PP_2173	0.18	-0.9
2,479,347	-		PP_2173	0.18	+0.0
2,479,394	-		PP_2173	0.23	-0.2
2,479,396	-		PP_2173	0.23	-0.4
2,479,396	-		PP_2173	0.23	+0.6
2,479,442	-		PP_2173	0.29	-0.2
2,479,515	+		PP_2173	0.37	-1.6
2,479,516	-		PP_2173	0.37	+0.3
2,479,666	-		PP_2173	0.54	-1.2
2,479,694	-		PP_2173	0.58	-1.6