Strain Fitness in Pseudomonas putida KT2440 around PP_2170

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,475,486	+		PP_2169	0.13	+0.4
2,475,539	+		PP_2169	0.18	+0.8
2,475,539	+		PP_2169	0.18	+1.4
2,475,540	-		PP_2169	0.18	-1.2
2,475,540	-		PP_2169	0.18	+1.0
2,475,540	-		PP_2169	0.18	+0.7
2,475,627	-		PP_2169	0.27	+2.1
2,475,627	-		PP_2169	0.27	-1.9
2,475,627	-		PP_2169	0.27	-1.2
2,475,627	-		PP_2169	0.27	-0.4
2,475,627	-		PP_2169	0.27	-1.9
2,475,638	+		PP_2169	0.28	-0.9
2,475,639	-		PP_2169	0.28	-2.0
2,475,771	-		PP_2169	0.41	-2.0
2,475,900	-		PP_2169	0.54	-2.5
2,475,919	-		PP_2169	0.55	+2.1
2,476,076	+		PP_2169	0.71	+2.4
2,476,229	+		PP_2169	0.86	-0.1
2,476,338	+				-0.5
2,476,338	+				-1.2
2,476,339	-				-0.6
2,476,360	+				-0.6
2,476,384	+				-2.3
2,476,384	+				-0.7
2,476,384	+				-0.2
2,476,384	+				+0.4
2,476,384	+				+0.9
2,476,384	+				-1.4
2,476,384	+				+1.2
2,476,385	-				-1.2
2,476,385	-				-1.9
2,476,385	-				+0.2
2,476,389	-				-0.3
2,476,414	+				+0.9
2,476,431	+				-3.4
2,476,431	+				-2.2
2,476,431	+				-1.4
2,476,431	+				+0.7
2,476,431	+				+1.4
2,476,431	+				+0.8
2,476,432	-				-1.2
2,476,432	-				-2.4
2,476,432	-				-1.6
2,476,432	-				-1.0
2,476,432	-				-0.5
2,476,432	-				-1.2
2,476,432	-				-2.3
2,476,507	+				+0.7
2,476,511	+				-0.1
2,476,511	+				-2.5
2,476,511	+				+0.2
2,476,511	+				-1.9
2,476,511	+				+1.6
2,476,511	+				+1.6
2,476,511	+				-2.4
2,476,512	-				+1.4
2,476,512	-				-1.4
2,476,512	-				-3.3
2,476,512	-				-2.9
2,476,513	+				+1.2
2,476,514	-				+0.3
2,476,548	+		PP_2170	0.12	+0.8
2,476,548	+		PP_2170	0.12	-0.4
2,476,553	+		PP_2170	0.12	+1.1
2,476,696	-		PP_2170	0.33	-2.4
2,476,696	-		PP_2170	0.33	+2.0
2,476,696	-		PP_2170	0.33	+1.6
2,476,740	-		PP_2170	0.39	-3.3
2,476,740	-		PP_2170	0.39	+0.3
2,476,742	-		PP_2170	0.39	+1.6
2,476,753	-		PP_2170	0.41	-1.3
2,476,782	+		PP_2170	0.45	-0.4
2,476,782	+		PP_2170	0.45	-1.1
2,476,783	-		PP_2170	0.45	+1.1
2,476,783	-		PP_2170	0.45	+1.3
2,476,783	-		PP_2170	0.45	+0.9
2,476,783	-		PP_2170	0.45	-1.9
2,476,863	+		PP_2170	0.57	+1.6
2,476,863	+		PP_2170	0.57	+1.4
2,476,864	-		PP_2170	0.57	-0.4
2,477,181	+				-2.9
2,477,181	+				-3.3
2,477,181	+				+1.1
2,477,181	+				+0.9
2,477,182	-				+1.7
2,477,211	+				+0.7
2,477,211	+				-0.6
2,477,211	+				+1.3
2,477,212	-				-1.6
2,477,212	-				+0.4
2,477,543	+		PP_2171	0.53	-1.5
2,477,552	-		PP_2171	0.55	-1.6
2,477,589	+		PP_2171	0.60	+1.8
2,477,590	-		PP_2171	0.61	+0.6
2,477,590	-		PP_2171	0.61	+0.3
2,477,728	+		PP_2171	0.83	+0.0
2,477,848	+				-1.4
2,477,848	+				+0.2
2,477,849	-				+0.4
2,477,891	-				+1.9
2,477,891	-				+1.3
2,477,891	-				-1.4
2,477,917	-				-0.2
2,477,917	-				+1.8
2,477,984	+				+0.5
2,478,026	+				-1.6
2,478,027	-				-2.3
2,478,116	+				-1.2
2,478,117	-				+3.3
2,478,117	-				+0.3
2,478,117	-				-1.2
2,478,117	-				-0.7