Strain Fitness in Pseudomonas putida KT2440 around PP_2131

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,431,331	+		PP_2130	0.68	-1.0
2,431,332	-		PP_2130	0.68	-1.8
2,431,332	-		PP_2130	0.68	+3.1
2,431,475	+		PP_2130	0.76	-0.4
2,431,476	-		PP_2130	0.76	-0.8
2,431,508	+		PP_2130	0.77	-1.0
2,431,556	+		PP_2130	0.80	-0.6
2,431,556	+				+0.5
2,431,556	+		PP_2130	0.80	-2.2
2,431,557	-		PP_2130	0.80	-2.3
2,431,560	-		PP_2130	0.80	-2.1
2,431,560	-		PP_2130	0.80	-1.1
2,431,573	-		PP_2130	0.81	+1.3
2,431,721	+		PP_2130	0.88	-2.9
2,431,721	+		PP_2130	0.88	-0.2
2,431,758	-		PP_2130	0.90	-0.4
2,431,767	-				-2.0
2,431,811	+				+1.1
2,431,811	+				-0.3
2,431,811	+				-1.7
2,431,812	-				-0.1
2,431,814	+				-2.5
2,431,814	+				-1.2
2,431,815	-				+2.2
2,431,815	-				-2.3
2,431,815	-				-3.0
2,431,887	+				-3.0
2,431,887	+				+1.2
2,431,887	+				-1.1
2,431,888	-				+1.0
2,431,888	-				-2.8
2,431,891	+				-0.3
2,431,891	+				+1.1
2,431,892	-				-0.2
2,431,892	-				-3.0
2,431,892	-				-0.1
2,431,892	-				+0.2
2,431,892	-				-2.2
2,431,911	+				-0.1
2,431,911	+				+0.5
2,431,911	+				-0.7
2,431,911	+				-1.7
2,431,912	-				-2.8
2,431,912	-				-3.1
2,431,958	-				+0.9
2,431,968	-				+1.1
2,431,975	+				-1.0
2,431,976	-				-1.3
2,431,980	+				+0.9
2,432,018	+				-0.4
2,432,019	-				-0.3
2,432,029	+				-2.4
2,432,029	+				+1.9
2,432,029	+				+0.3
2,432,029	+				-2.3
2,432,030	-				-1.8
2,432,030	-				+0.4
2,432,098	+				+1.1
2,432,099	-				-2.2
2,432,736	+		PP_2131	0.31	+0.5
2,432,736	+		PP_2131	0.31	-1.1
2,433,279	-		PP_2131	0.60	-1.1
2,433,321	+		PP_2131	0.62	-0.1
2,433,579	-		PP_2131	0.75	-1.8
2,433,677	+		PP_2131	0.80	-0.4
2,433,678	-		PP_2131	0.80	-1.2
2,433,678	-		PP_2131	0.80	+2.3
2,433,755	-		PP_2131	0.84	-1.8
2,433,854	+		PP_2131	0.89	-2.5
2,433,855	-		PP_2131	0.89	-2.1
2,433,913	+				-0.0
2,433,914	-				-2.9
2,433,953	+				-1.5
2,433,953	+				-2.8
2,433,953	+				+0.9
2,434,023	+				-2.5
2,434,023	+				+0.8
2,434,023	+				+2.2
2,434,024	-				-1.5
2,434,024	-				-0.7
2,434,024	-				+2.2
2,434,453	+		PP_2132	0.65	+0.5
2,434,453	+		PP_2132	0.65	+1.0
2,434,453	+		PP_2132	0.65	-2.4
2,434,454	-		PP_2132	0.66	+1.8
2,434,504	+		PP_2132	0.77	+0.5
2,434,598	+				+0.3
2,434,631	-				+0.8
2,434,639	+				+0.5
2,434,639	+				-1.8
2,434,639	+				+0.8
2,434,639	+				-1.5
2,434,639	+				-0.7
2,434,640	-				-0.5
2,434,709	+				+2.0
2,434,709	+				+0.8
2,434,715	+				+2.6