Strain Fitness in Pseudomonas putida KT2440 around PP_2097

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,390,538	+		PP_2096	0.62	+0.9
2,390,560	-		PP_2096	0.63	-1.6
2,390,560	-		PP_2096	0.63	-2.6
2,390,580	+		PP_2096	0.64	+0.6
2,390,607	+		PP_2096	0.66	-1.9
2,390,608	-		PP_2096	0.66	+0.9
2,390,707	+		PP_2096	0.70	-2.8
2,390,707	+		PP_2096	0.70	-1.8
2,390,708	-		PP_2096	0.70	-0.8
2,390,748	+		PP_2096	0.72	+0.6
2,390,867	+		PP_2096	0.77	+0.2
2,390,867	+		PP_2096	0.77	-1.9
2,390,867	+		PP_2096	0.77	+1.9
2,390,867	+		PP_2096	0.77	+0.6
2,390,868	-		PP_2096	0.77	-1.2
2,391,034	-		PP_2096	0.85	-0.8
2,391,067	+		PP_2096	0.86	-0.0
2,391,068	-		PP_2096	0.86	-3.0
2,391,068	-		PP_2096	0.86	-2.1
2,391,068	-		PP_2096	0.86	+0.2
2,391,099	+		PP_2096	0.88	+0.1
2,391,146	+		PP_2096	0.90	+0.5
2,391,147	-		PP_2096	0.90	-1.2
2,391,158	-				-2.5
2,391,231	+				-2.6
2,391,286	-				-0.0
2,391,388	+				-2.3
2,391,389	-				-1.6
2,391,411	+				-3.0
2,391,412	-				-2.2
2,391,415	+				-1.4
2,391,415	+				+1.4
2,391,415	+				-0.5
2,391,415	+				-0.4
2,391,416	-				-3.2
2,391,417	+				-2.7
2,391,418	-				-1.1
2,391,418	-				-2.8
2,391,437	+				-1.0
2,391,471	+				-0.4
2,391,471	+				-1.2
2,391,471	+				-0.3
2,391,471	+				-2.8
2,391,471	+				-0.2
2,391,472	-				-1.9
2,391,607	+				+1.5
2,391,794	-		PP_2097	0.13	-2.4
2,391,871	+		PP_2097	0.17	-1.0
2,391,932	-		PP_2097	0.19	-2.3
2,391,946	+		PP_2097	0.20	-0.3
2,391,946	+		PP_2097	0.20	+0.8
2,391,947	-		PP_2097	0.20	-1.2
2,391,947	-				+0.6
2,391,949	-		PP_2097	0.20	+1.2
2,392,171	+		PP_2097	0.29	-2.8
2,392,171	+		PP_2097	0.29	-2.1
2,392,171	+		PP_2097	0.29	+0.4
2,392,171	+		PP_2097	0.29	+1.8
2,392,171	+		PP_2097	0.29	-0.3
2,392,171	+		PP_2097	0.29	-2.5
2,392,172	-		PP_2097	0.29	-2.5
2,392,172	-		PP_2097	0.29	-1.4
2,392,272	-		PP_2097	0.33	-2.5
2,392,478	-		PP_2097	0.42	-0.5
2,392,527	+		PP_2097	0.44	+0.6
2,392,859	+		PP_2097	0.58	+1.0
2,392,936	+		PP_2097	0.61	-0.3
2,392,937	-		PP_2097	0.61	-1.8
2,393,044	+		PP_2097	0.65	-0.0
2,393,045	-		PP_2097	0.65	-2.2
2,393,045	-		PP_2097	0.65	-0.0
2,393,050	+		PP_2097	0.66	-2.5
2,393,051	-		PP_2097	0.66	-2.1
2,393,104	+		PP_2097	0.68	+0.3
2,393,104	+		PP_2097	0.68	-2.5
2,393,105	-		PP_2097	0.68	+1.5
2,393,105	-		PP_2097	0.68	-0.4
2,393,113	+		PP_2097	0.68	-0.0
2,393,113	+		PP_2097	0.68	-1.7
2,393,114	-		PP_2097	0.68	-2.9
2,393,114	-		PP_2097	0.68	-0.2
2,393,166	+		PP_2097	0.70	-0.5
2,393,166	+		PP_2097	0.70	+1.1
2,393,166	+		PP_2097	0.70	-2.0
2,393,167	-		PP_2097	0.71	-2.0
2,393,167	-		PP_2097	0.71	-2.7
2,393,245	+		PP_2097	0.74	-3.1
2,393,339	-		PP_2097	0.78	-1.0
2,393,339	-		PP_2097	0.78	-0.2
2,393,339	-		PP_2097	0.78	-1.2
2,393,422	-		PP_2097	0.81	-0.1
2,393,431	+		PP_2097	0.82	-2.0
2,393,432	-		PP_2097	0.82	-2.4
2,393,571	+		PP_2097	0.87	+0.6
2,393,572	-		PP_2097	0.87	-1.0
2,393,699	+				-0.6
2,393,699	+				-0.4
2,393,822	+				-1.4
2,393,822	+				-3.3
2,393,822	+				-1.2
2,393,823	-				+0.8
2,393,823	-				+0.8
2,393,824	+				-2.1
2,393,825	-				+0.4
2,393,825	-				-0.2
2,393,873	-				-2.0
2,393,994	+				+1.3
2,394,020	+				-1.2
2,394,103	-				+0.8
2,394,103	-				-0.0
2,394,111	+				-2.4
2,394,263	+				-1.0
2,394,497	+		PP_2098	0.37	-0.2
2,394,497	+		PP_2098	0.37	+0.1
2,394,498	-		PP_2098	0.37	+1.1
2,394,498	-		PP_2098	0.37	-1.8
2,394,647	+		PP_2098	0.47	-0.1
2,394,648	-		PP_2098	0.47	-2.5
2,394,648	-		PP_2098	0.47	+0.9
2,394,674	+		PP_2098	0.49	+0.3
2,394,674	+		PP_2098	0.49	-0.8
2,394,701	-		PP_2098	0.51	+0.3
2,394,701	-		PP_2098	0.51	-2.9
2,394,718	+		PP_2098	0.52	-2.5
2,394,719	-		PP_2098	0.52	+1.2
2,394,719	-		PP_2098	0.52	-0.1
2,394,778	-		PP_2098	0.56	-2.3