Strain Fitness in Pseudomonas putida KT2440 around PP_2083

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,374,749	-		PP_2082	0.66	+0.6
2,374,749	-		PP_2082	0.66	-0.8
2,374,823	+		PP_2082	0.70	-0.8
2,374,823	+		PP_2082	0.70	+0.6
2,374,823	+		PP_2082	0.70	+0.4
2,374,823	+		PP_2082	0.70	-2.7
2,374,824	-		PP_2082	0.70	-1.2
2,374,824	-		PP_2082	0.70	-0.0
2,374,824	-		PP_2082	0.70	+0.7
2,374,824	-		PP_2082	0.70	-2.4
2,374,824	-		PP_2082	0.70	+1.1
2,374,824	-		PP_2082	0.70	-2.1
2,374,871	+		PP_2082	0.72	+1.4
2,374,872	-		PP_2082	0.72	-0.1
2,374,919	+		PP_2082	0.74	+2.1
2,374,946	+		PP_2082	0.75	+1.6
2,374,946	+		PP_2082	0.75	+0.9
2,375,108	-		PP_2082	0.82	-2.8
2,375,399	+				+2.8
2,375,400	-				-1.6
2,375,646	+				+0.8
2,375,647	-				-1.8
2,375,667	-				-1.2
2,375,722	+				+0.6
2,375,860	+		PP_2083	0.21	-1.7
2,375,861	-		PP_2083	0.22	-0.7
2,375,861	-		PP_2083	0.22	+1.4
2,375,891	-		PP_2083	0.25	-1.4
2,376,090	-		PP_2083	0.45	+2.2
2,376,237	-		PP_2083	0.59	-0.4
2,376,279	-		PP_2083	0.64	+1.2
2,376,374	+		PP_2083	0.73	+0.8
2,376,375	-		PP_2083	0.73	-0.0
2,376,375	-		PP_2083	0.73	+0.9
2,376,375	-		PP_2083	0.73	+2.5
2,376,375	-		PP_2083	0.73	-0.0
2,376,649	-				+2.6
2,376,649	-				+1.7
2,376,685	-				+0.6
2,376,750	+				-1.2
2,376,751	-				+0.3
2,376,778	+				-1.2
2,376,779	-				-2.6
2,376,779	-				-1.7
2,376,797	+				-1.8
2,376,797	+				-0.1
2,376,797	+				-1.8
2,376,797	+				-2.0
2,376,797	+				+0.8
2,376,798	-				+2.2
2,376,798	-				-1.6
2,376,798	-				-1.2
2,376,853	+				-1.2
2,376,853	+				-2.0
2,376,853	+				-2.8
2,376,854	-				-2.3
2,376,854	-				-1.9
2,376,854	-				-0.2
2,376,893	+				-0.7
2,376,893	+				+2.5
2,376,894	-		PP_2084	0.10	-1.4
2,377,123	+		PP_2084	0.57	+1.2
2,377,216	-		PP_2084	0.76	-2.3
2,377,273	+		PP_2084	0.87	-2.9
2,377,273	+		PP_2084	0.87	+0.3
2,377,273	+		PP_2084	0.87	-1.8
2,377,274	-		PP_2084	0.87	-2.7
2,377,274	-		PP_2084	0.87	-0.2
2,377,274	-		PP_2084	0.87	-2.6
2,377,279	+		PP_2084	0.88	+1.6
2,377,279	+		PP_2084	0.88	-0.8
2,377,279	+		PP_2084	0.88	+2.0
2,377,279	+				+1.6
2,377,279	+		PP_2084	0.88	+0.9
2,377,279	+		PP_2084	0.88	+0.2
2,377,280	-		PP_2084	0.89	-1.0
2,377,280	-		PP_2084	0.89	-0.8
2,377,280	-		PP_2084	0.89	-0.0
2,377,280	-		PP_2084	0.89	+0.6
2,377,333	+				+1.0
2,377,333	+				+0.2
2,377,334	-				-1.6