Strain Fitness in Pseudomonas putida KT2440 around PP_2066

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,349,987	+		PP_2065	0.71	+0.6
2,350,020	+		PP_2065	0.72	-1.9
2,350,021	-		PP_2065	0.72	+0.7
2,350,021	-		PP_2065	0.72	-1.1
2,350,083	+		PP_2065	0.74	-3.0
2,350,083	+		PP_2065	0.74	+0.7
2,350,083	+		PP_2065	0.74	-2.8
2,350,083	+		PP_2065	0.74	-1.3
2,350,083	+		PP_2065	0.74	-2.6
2,350,084	-		PP_2065	0.74	-2.7
2,350,191	-		PP_2065	0.78	-1.9
2,350,312	-		PP_2065	0.82	-0.1
2,350,491	+		PP_2065	0.87	+1.5
2,350,491	+		PP_2065	0.87	+0.4
2,350,491	+		PP_2065	0.87	+0.2
2,350,492	-		PP_2065	0.87	-0.8
2,350,492	-		PP_2065	0.87	-0.4
2,350,492	-		PP_2065	0.87	+1.4
2,350,492	-		PP_2065	0.87	+2.4
2,350,624	+				-1.8
2,350,625	-				-2.0
2,350,625	-				-2.1
2,350,625	-				-2.4
2,350,781	-				+2.4
2,350,875	+				-1.6
2,350,876	-				-2.2
2,350,921	-				-1.8
2,350,972	+				+0.6
2,350,972	+				+0.1
2,351,035	-		PP_2066	0.14	-1.8
2,351,151	+		PP_2066	0.29	-2.7
2,351,152	-		PP_2066	0.29	+1.0
2,351,152	-		PP_2066	0.29	-0.4
2,351,152	-		PP_2066	0.29	-0.2
2,351,152	-		PP_2066	0.29	-0.3
2,351,220	+		PP_2066	0.38	+0.7
2,351,221	-		PP_2066	0.38	+0.7
2,351,235	+		PP_2066	0.40	-0.0
2,351,235	+		PP_2066	0.40	-2.0
2,351,235	+		PP_2066	0.40	-2.3
2,351,235	+		PP_2066	0.40	-3.5
2,351,235	+		PP_2066	0.40	+1.3
2,351,235	+		PP_2066	0.40	-1.6
2,351,236	-		PP_2066	0.40	-2.6
2,351,236	-		PP_2066	0.40	+0.6
2,351,236	-		PP_2066	0.40	-3.2
2,351,236	-		PP_2066	0.40	-2.3
2,351,236	-		PP_2066	0.40	-1.0
2,351,305	-		PP_2066	0.49	+0.7
2,351,305	-		PP_2066	0.49	-2.5
2,351,305	-		PP_2066	0.49	-2.0
2,351,556	+		PP_2066	0.82	-0.1
2,351,557	-		PP_2066	0.82	+0.7
2,351,653	-				-0.8
2,351,668	+				+2.0
2,351,668	+				-0.4
2,351,668	+				-0.0
2,351,669	-				-0.7
2,351,669	-				-0.8
2,351,708	+				-0.8
2,351,708	+				+1.0
2,351,708	+				-1.2
2,351,708	+				-1.8
2,351,820	+				+0.9
2,351,821	-				-2.9
2,351,835	+				-2.8
2,351,835	+				-0.4
2,351,835	+				-2.7
2,351,835	+				+0.1
2,351,835	+				-0.1
2,351,836	-				-2.3
2,351,836	-				+2.0
2,351,847	+				+2.4
2,351,848	-				-1.6
2,351,930	-		PP_2067	0.12	-0.5
2,352,384	+		PP_2067	0.42	-0.7
2,352,384	+		PP_2067	0.42	-1.2
2,352,385	-		PP_2067	0.42	+0.8
2,352,463	-		PP_2067	0.47	-1.9