Strain Fitness in Pseudomonas putida KT2440 around PP_2042

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,320,588	+		PP_2041	0.31	-1.5
2,320,589	-		PP_2041	0.31	+0.0
2,320,669	-		PP_2041	0.39	-0.1
2,320,744	+		PP_2041	0.47	-0.1
2,320,744	+		PP_2041	0.47	-2.3
2,320,744	+		PP_2041	0.47	-2.2
2,320,744	+		PP_2041	0.47	-1.8
2,320,745	-		PP_2041	0.48	-2.0
2,321,047	+		PP_2041	0.79	-0.8
2,321,047	+		PP_2041	0.79	-2.1
2,321,048	-		PP_2041	0.80	+0.3
2,321,133	+		PP_2041	0.89	-0.4
2,321,134	-		PP_2041	0.89	-2.2
2,321,134	-		PP_2041	0.89	-1.1
2,321,134	-		PP_2041	0.89	+0.4
2,321,290	+				-0.6
2,321,313	-				-2.5
2,321,313	-				-2.5
2,321,316	+				-1.5
2,321,316	+				-1.0
2,321,316	+				-1.3
2,321,316	+				-1.3
2,321,317	-				-0.1
2,321,317	-				-0.4
2,321,317	-				-0.6
2,321,325	+				-2.6
2,321,402	-				-1.4
2,321,402	-				-1.3
2,321,427	+				-0.1
2,321,431	-				+0.1
2,321,439	+				-1.2
2,321,439	+				-0.8
2,321,440	-				-2.3
2,321,440	-				-1.1
2,321,448	-				+0.7
2,321,467	-				-0.8
2,321,495	+				-0.5
2,321,496	-				-2.1
2,321,755	-		PP_2042	0.16	+0.5
2,321,758	+		PP_2042	0.16	-2.9
2,321,758	+		PP_2042	0.16	-0.3
2,321,758	+		PP_2042	0.16	-1.5
2,321,759	-		PP_2042	0.16	-2.9
2,321,759	-		PP_2042	0.16	-2.3
2,321,764	+		PP_2042	0.17	-1.3
2,321,765	-		PP_2042	0.17	+2.8
2,321,847	+		PP_2042	0.21	-1.9
2,321,872	+		PP_2042	0.22	-0.4
2,321,875	+		PP_2042	0.23	-1.8
2,321,875	+		PP_2042	0.23	-1.9
2,321,875	+		PP_2042	0.23	-3.2
2,321,876	-		PP_2042	0.23	-1.3
2,322,052	+		PP_2042	0.32	-1.2
2,322,052	+		PP_2042	0.32	+0.3
2,322,052	+		PP_2042	0.32	+0.4
2,322,053	-		PP_2042	0.32	-1.0
2,322,053	-		PP_2042	0.32	-2.4
2,322,382	+		PP_2042	0.50	-0.8
2,322,382	+		PP_2042	0.50	-1.6
2,322,382	+		PP_2042	0.50	-2.9
2,322,383	-		PP_2042	0.50	-0.1
2,322,649	+		PP_2042	0.64	-2.3
2,322,649	+		PP_2042	0.64	+0.1
2,322,650	-		PP_2042	0.64	+0.7
2,322,762	+		PP_2042	0.70	-2.7
2,322,763	-		PP_2042	0.71	-1.9
2,322,810	-		PP_2042	0.73	+0.1
2,322,863	+		PP_2042	0.76	+0.5
2,322,884	-		PP_2042	0.77	+0.1
2,322,884	-		PP_2042	0.77	+0.0
2,322,907	+		PP_2042	0.78	-2.7
2,322,908	-		PP_2042	0.78	-2.1
2,323,063	+		PP_2042	0.87	-1.8
2,323,210	+				+1.8
2,323,210	+				+0.7
2,323,210	+				-0.1
2,323,211	-				+0.0
2,323,211	-				+0.1
2,323,228	+				+0.2
2,323,465	+		PP_2043	0.11	-0.1
2,323,533	-		PP_2043	0.17	-0.2
2,323,553	+		PP_2043	0.18	-2.1
2,323,824	-		PP_2043	0.38	-1.8
2,323,824	-		PP_2043	0.38	-2.7
2,323,943	+		PP_2043	0.47	-1.4
2,323,943	+		PP_2043	0.47	-2.3
2,323,944	-		PP_2043	0.47	-0.7
2,323,946	+		PP_2043	0.48	-1.2
2,323,947	-		PP_2043	0.48	-1.3
2,323,947	-		PP_2043	0.48	+1.5
2,324,048	+		PP_2043	0.55	+1.2
2,324,049	-		PP_2043	0.55	-0.1
2,324,249	+		PP_2043	0.70	-1.1
2,324,297	+		PP_2043	0.74	-1.3