Strain Fitness in Pseudomonas putida KT2440 around PP_2040

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,318,221	+		PP_2039	0.40	-2.9
2,318,221	+		PP_2039	0.40	+1.3
2,318,221	+		PP_2039	0.40	-2.2
2,318,221	+		PP_2039	0.40	+1.5
2,318,222	-		PP_2039	0.40	-0.8
2,318,222	-		PP_2039	0.40	-1.6
2,318,222	-		PP_2039	0.40	+1.1
2,318,222	-				+1.5
2,318,222	-		PP_2039	0.40	-2.4
2,318,245	+		PP_2039	0.42	+1.1
2,318,246	-		PP_2039	0.42	+0.5
2,318,246	-		PP_2039	0.42	+1.1
2,318,490	+		PP_2039	0.63	+0.9
2,318,491	-		PP_2039	0.63	-2.3
2,318,566	+		PP_2039	0.69	-0.4
2,318,566	+		PP_2039	0.69	+2.7
2,318,567	-		PP_2039	0.69	-1.8
2,318,599	-		PP_2039	0.72	+1.0
2,318,625	+		PP_2039	0.74	-0.3
2,318,625	+		PP_2039	0.74	-2.2
2,318,626	-		PP_2039	0.74	-2.6
2,318,626	-		PP_2039	0.74	+1.0
2,318,626	-		PP_2039	0.74	+1.5
2,318,675	-		PP_2039	0.78	-1.4
2,318,675	-		PP_2039	0.78	+0.2
2,318,709	+		PP_2039	0.81	+0.4
2,318,786	+		PP_2039	0.88	+1.1
2,318,786	+		PP_2039	0.88	-2.6
2,318,786	+		PP_2039	0.88	+0.1
2,318,787	-		PP_2039	0.88	-3.1
2,318,831	+				+1.5
2,318,832	-				-2.2
2,318,832	-				-0.2
2,318,847	+				-2.1
2,318,848	-				+1.8
2,318,848	-				-2.3
2,318,931	+				-3.0
2,318,974	-				+0.1
2,318,996	+				-1.8
2,319,040	+				-1.9
2,319,041	-				+1.5
2,319,041	-				+0.5
2,319,151	+		PP_2040	0.13	+0.8
2,319,193	+		PP_2040	0.16	+0.5
2,319,372	+		PP_2040	0.30	-1.3
2,319,372	+		PP_2040	0.30	-2.8
2,319,372	+		PP_2040	0.30	+0.0
2,319,372	+		PP_2040	0.30	-2.5
2,319,373	-		PP_2040	0.30	+1.1
2,319,484	-		PP_2040	0.38	-2.7
2,319,660	+		PP_2040	0.52	-0.6
2,319,660	+		PP_2040	0.52	-1.6
2,319,660	+		PP_2040	0.52	-1.6
2,319,661	-		PP_2040	0.52	-1.8
2,319,661	-		PP_2040	0.52	-0.5
2,319,661	-		PP_2040	0.52	-0.9
2,319,661	-		PP_2040	0.52	+0.2
2,319,661	-		PP_2040	0.52	+2.5
2,319,720	+		PP_2040	0.56	-0.2
2,319,720	+		PP_2040	0.56	+0.0
2,319,720	+		PP_2040	0.56	-1.3
2,319,993	+		PP_2040	0.78	+0.1
2,319,993	+		PP_2040	0.78	+0.5
2,319,993	+		PP_2040	0.78	-2.5
2,319,993	+		PP_2040	0.78	-1.8
2,319,993	+		PP_2040	0.78	-0.8
2,319,994	-		PP_2040	0.78	-1.1
2,320,333	+				-3.0
2,320,588	+		PP_2041	0.31	-1.5
2,320,589	-		PP_2041	0.31	+0.0
2,320,669	-		PP_2041	0.39	-0.1
2,320,744	+		PP_2041	0.47	-0.1
2,320,744	+		PP_2041	0.47	-2.3
2,320,744	+		PP_2041	0.47	-2.2
2,320,744	+		PP_2041	0.47	-1.8
2,320,745	-		PP_2041	0.48	-2.0
2,321,047	+		PP_2041	0.79	-0.8
2,321,047	+		PP_2041	0.79	-2.1
2,321,048	-		PP_2041	0.80	+0.3
2,321,133	+		PP_2041	0.89	-0.4
2,321,134	-		PP_2041	0.89	-2.2
2,321,134	-		PP_2041	0.89	-1.1
2,321,134	-		PP_2041	0.89	+0.4