Strain Fitness in Pseudomonas putida KT2440 around PP_2035

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,312,110	-		PP_2034	0.41	-2.2
2,312,225	+		PP_2034	0.50	-1.1
2,312,226	-		PP_2034	0.50	+2.1
2,312,226	-		PP_2034	0.50	-0.8
2,312,274	+		PP_2034	0.54	+0.6
2,312,275	-		PP_2034	0.54	-1.8
2,312,365	-		PP_2034	0.61	-0.2
2,312,405	+		PP_2034	0.64	+1.0
2,312,405	+		PP_2034	0.64	-2.3
2,312,405	+		PP_2034	0.64	-2.6
2,312,405	+		PP_2034	0.64	+0.5
2,312,405	+		PP_2034	0.64	-0.2
2,312,405	+		PP_2034	0.64	-1.1
2,312,405	+		PP_2034	0.64	-2.3
2,312,405	+		PP_2034	0.64	-2.4
2,312,406	-		PP_2034	0.64	+1.6
2,312,406	-		PP_2034	0.64	-0.1
2,312,406	-		PP_2034	0.64	-2.2
2,312,406	-		PP_2034	0.64	-0.1
2,312,406	-		PP_2034	0.64	-0.8
2,312,406	-		PP_2034	0.64	-2.4
2,312,406	-		PP_2034	0.64	-0.3
2,312,406	-		PP_2034	0.64	-0.1
2,312,406	-		PP_2034	0.64	-3.2
2,312,409	+		PP_2034	0.65	+0.4
2,312,409	+		PP_2034	0.65	+0.4
2,312,409	+		PP_2034	0.65	-1.8
2,312,409	+		PP_2034	0.65	+1.3
2,312,409	+		PP_2034	0.65	-0.4
2,312,409	+		PP_2034	0.65	+0.7
2,312,409	+		PP_2034	0.65	-0.9
2,312,409	+		PP_2034	0.65	-1.1
2,312,410	-		PP_2034	0.65	-1.1
2,312,410	-		PP_2034	0.65	+1.8
2,312,410	-		PP_2034	0.65	-1.9
2,312,410	-		PP_2034	0.65	-1.3
2,312,410	-		PP_2034	0.65	-2.9
2,312,410	-		PP_2034	0.65	-0.2
2,312,410	-		PP_2034	0.65	-2.5
2,312,412	-		PP_2034	0.65	-2.1
2,312,412	-		PP_2034	0.65	+1.3
2,312,479	+		PP_2034	0.70	-3.2
2,312,479	+		PP_2034	0.70	+2.3
2,312,479	+		PP_2034	0.70	-0.7
2,312,480	-		PP_2034	0.70	+0.6
2,312,480	-		PP_2034	0.70	+0.6
2,312,550	+		PP_2034	0.76	-2.2
2,312,609	-		PP_2034	0.80	-3.0
2,312,623	+		PP_2034	0.82	-0.6
2,312,677	-		PP_2034	0.86	+2.2
2,312,688	+		PP_2034	0.87	+0.8
2,312,819	+				-0.7
2,313,101	-		PP_2035	0.19	-1.3
2,313,165	+		PP_2035	0.24	+0.8
2,313,165	+		PP_2035	0.24	+1.2
2,313,166	-		PP_2035	0.24	+0.2
2,313,166	-		PP_2035	0.24	+0.0
2,313,166	-		PP_2035	0.24	+0.2
2,313,166	-		PP_2035	0.24	-0.5
2,313,166	-		PP_2035	0.24	-1.7
2,313,378	+		PP_2035	0.42	-3.5
2,313,378	+		PP_2035	0.42	-1.1
2,313,378	+		PP_2035	0.42	+0.9
2,313,497	+		PP_2035	0.51	-1.9
2,313,498	-		PP_2035	0.51	-2.2
2,313,520	-		PP_2035	0.53	-2.2
2,313,520	-		PP_2035	0.53	-2.4
2,313,585	+		PP_2035	0.59	-1.8
2,313,585	+		PP_2035	0.59	+1.7
2,313,585	+		PP_2035	0.59	-2.5
2,313,585	+		PP_2035	0.59	-0.2
2,313,586	-		PP_2035	0.59	+0.1
2,313,586	-		PP_2035	0.59	-2.7
2,313,586	-		PP_2035	0.59	-3.2
2,313,586	-		PP_2035	0.59	+0.4
2,313,701	+		PP_2035	0.68	-1.7
2,313,769	-		PP_2035	0.74	-1.0
2,313,776	+		PP_2035	0.74	-0.5
2,313,776	+		PP_2035	0.74	-2.1
2,313,777	-		PP_2035	0.74	-3.1
2,313,790	-				+0.5
2,313,790	-		PP_2035	0.75	-2.4
2,313,867	+		PP_2035	0.82	-0.2
2,313,867	+		PP_2035	0.82	-0.8
2,313,867	+		PP_2035	0.82	-3.5
2,313,993	+				-1.3
2,314,101	-				-1.1
2,314,139	+				+0.9
2,314,140	-				+0.5
2,314,410	-		PP_2036	0.19	-1.7
2,314,447	+		PP_2036	0.24	+2.7
2,314,448	-		PP_2036	0.24	-1.9
2,314,559	+		PP_2036	0.36	+2.0
2,314,716	-		PP_2036	0.54	-2.8
2,314,757	+		PP_2036	0.59	-0.5
2,314,757	+		PP_2036	0.59	+0.6
2,314,758	-		PP_2036	0.59	-0.4
2,314,758	-		PP_2036	0.59	-1.7
2,314,758	-		PP_2036	0.59	-1.5
2,314,822	-		PP_2036	0.66	-1.1
2,314,964	+		PP_2036	0.82	-2.4
2,314,965	-		PP_2036	0.82	-1.1
2,314,965	-		PP_2036	0.82	-2.2
2,315,025	+		PP_2036	0.89	-1.3
2,315,025	+		PP_2036	0.89	-2.3