Strain Fitness in Pseudomonas putida KT2440 around PP_2033

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,309,348	+		PP_2032	0.30	-1.7
2,309,348	+		PP_2032	0.30	+1.5
2,309,372	+		PP_2032	0.32	-1.5
2,309,372	+		PP_2032	0.32	-2.2
2,309,372	+		PP_2032	0.32	-1.7
2,309,373	-		PP_2032	0.32	+0.8
2,309,373	-		PP_2032	0.32	+0.8
2,309,488	+		PP_2032	0.44	+0.2
2,309,516	-				+1.5
2,309,558	+		PP_2032	0.52	+0.7
2,309,559	-		PP_2032	0.52	-1.8
2,309,621	+		PP_2032	0.58	-0.5
2,309,622	-		PP_2032	0.58	+1.7
2,309,622	-		PP_2032	0.58	-0.5
2,309,622	-		PP_2032	0.58	-1.1
2,309,725	-		PP_2032	0.69	+0.5
2,309,733	+		PP_2032	0.70	-0.4
2,309,733	+		PP_2032	0.70	+1.5
2,309,734	-		PP_2032	0.70	+2.2
2,309,965	+				+1.2
2,309,965	+				-2.3
2,309,965	+				-2.1
2,309,977	-				-1.3
2,310,085	-				-2.8
2,310,085	-				+0.2
2,310,089	+				-1.3
2,310,089	+				-1.1
2,310,090	-				-1.8
2,310,090	-				-1.1
2,310,090	-				-3.0
2,310,090	-				+0.8
2,310,132	+				+0.9
2,310,286	-				-2.6
2,310,385	+		PP_2033	0.10	-2.7
2,310,386	-		PP_2033	0.10	-1.7
2,310,386	-		PP_2033	0.10	-2.4
2,310,428	-		PP_2033	0.14	-2.7
2,310,428	-		PP_2033	0.14	-3.2
2,310,428	-		PP_2033	0.14	-1.2
2,310,478	+		PP_2033	0.17	+0.5
2,310,478	+		PP_2033	0.17	-0.6
2,310,478	+		PP_2033	0.17	-0.4
2,310,479	-		PP_2033	0.17	-2.4
2,310,524	-		PP_2033	0.21	-2.7
2,310,524	-		PP_2033	0.21	-2.1
2,310,524	-		PP_2033	0.21	-2.7
2,310,806	+		PP_2033	0.42	-3.3
2,310,806	+		PP_2033	0.42	+1.3
2,310,807	-		PP_2033	0.42	-0.9
2,310,918	+		PP_2033	0.51	+0.9
2,310,919	-		PP_2033	0.51	+1.9
2,310,975	+		PP_2033	0.55	-0.7
2,311,050	-		PP_2033	0.61	-0.5
2,311,076	+		PP_2033	0.63	+0.5
2,311,077	-		PP_2033	0.63	-2.5
2,311,119	+		PP_2033	0.66	-1.2
2,311,201	+		PP_2033	0.73	-1.1
2,311,202	-		PP_2033	0.73	+0.3
2,311,202	-		PP_2033	0.73	-3.5
2,311,202	-		PP_2033	0.73	-2.4
2,311,202	-		PP_2033	0.73	-0.6
2,311,213	+		PP_2033	0.73	-1.7
2,311,214	-		PP_2033	0.74	+0.7
2,311,253	-		PP_2033	0.77	-0.6
2,311,438	+				+0.7
2,311,438	+				-3.1
2,311,438	+				-0.1
2,311,438	+				-2.7
2,311,439	-				+0.8
2,311,642	+				+1.2
2,311,642	+				-0.8
2,311,642	+				-1.7
2,311,643	-				-0.3
2,311,643	-				+0.7
2,312,110	-		PP_2034	0.41	-2.2
2,312,225	+		PP_2034	0.50	-1.1
2,312,226	-		PP_2034	0.50	+2.1
2,312,226	-		PP_2034	0.50	-0.8
2,312,274	+		PP_2034	0.54	+0.6
2,312,275	-		PP_2034	0.54	-1.8
2,312,365	-		PP_2034	0.61	-0.2
2,312,405	+		PP_2034	0.64	+1.0
2,312,405	+		PP_2034	0.64	-2.3
2,312,405	+		PP_2034	0.64	-2.6
2,312,405	+		PP_2034	0.64	+0.5
2,312,405	+		PP_2034	0.64	-0.2
2,312,405	+		PP_2034	0.64	-1.1
2,312,405	+		PP_2034	0.64	-2.3
2,312,405	+		PP_2034	0.64	-2.4
2,312,406	-		PP_2034	0.64	+1.6
2,312,406	-		PP_2034	0.64	-0.1
2,312,406	-		PP_2034	0.64	-2.2
2,312,406	-		PP_2034	0.64	-0.1
2,312,406	-		PP_2034	0.64	-0.8
2,312,406	-		PP_2034	0.64	-2.4
2,312,406	-		PP_2034	0.64	-0.3
2,312,406	-		PP_2034	0.64	-0.1
2,312,406	-		PP_2034	0.64	-3.2
2,312,409	+		PP_2034	0.65	+0.4
2,312,409	+		PP_2034	0.65	+0.4
2,312,409	+		PP_2034	0.65	-1.8
2,312,409	+		PP_2034	0.65	+1.3
2,312,409	+		PP_2034	0.65	-0.4
2,312,409	+		PP_2034	0.65	+0.7
2,312,409	+		PP_2034	0.65	-0.9
2,312,409	+		PP_2034	0.65	-1.1
2,312,410	-		PP_2034	0.65	-1.1
2,312,410	-		PP_2034	0.65	+1.8
2,312,410	-		PP_2034	0.65	-1.9
2,312,410	-		PP_2034	0.65	-1.3
2,312,410	-		PP_2034	0.65	-2.9
2,312,410	-		PP_2034	0.65	-0.2
2,312,410	-		PP_2034	0.65	-2.5
2,312,412	-		PP_2034	0.65	-2.1
2,312,412	-		PP_2034	0.65	+1.3
2,312,479	+		PP_2034	0.70	-3.2
2,312,479	+		PP_2034	0.70	+2.3
2,312,479	+		PP_2034	0.70	-0.7
2,312,480	-		PP_2034	0.70	+0.6
2,312,480	-		PP_2034	0.70	+0.6
2,312,550	+		PP_2034	0.76	-2.2