Strain Fitness in Pseudomonas putida KT2440 around PP_2021

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,293,517	+		PP_2019	0.80	-0.6
2,293,518	-		PP_2019	0.80	-3.0
2,293,518	-		PP_2019	0.80	+2.2
2,293,584	+		PP_2019	0.82	-2.1
2,293,584	+		PP_2019	0.82	-2.1
2,293,628	+		PP_2019	0.84	-3.2
2,293,628	+		PP_2019	0.84	-1.1
2,293,628	+		PP_2019	0.84	-1.8
2,293,628	+		PP_2019	0.84	+0.4
2,293,628	+		PP_2019	0.84	-0.1
2,293,629	-		PP_2019	0.84	+1.2
2,293,629	-		PP_2019	0.84	+1.4
2,293,629	-		PP_2019	0.84	-1.9
2,293,629	-		PP_2019	0.84	-2.8
2,293,697	+		PP_2019	0.87	-3.1
2,293,697	+		PP_2019	0.87	-1.8
2,293,698	-		PP_2019	0.87	-2.2
2,293,706	+		PP_2019	0.88	-2.4
2,293,706	+		PP_2019	0.88	-0.4
2,293,706	+		PP_2019	0.88	-2.8
2,293,706	+		PP_2019	0.88	-2.7
2,293,707	-		PP_2019	0.88	-0.3
2,293,707	-		PP_2019	0.88	+1.0
2,293,707	-		PP_2019	0.88	-3.1
2,293,707	-		PP_2019	0.88	+1.4
2,293,707	-		PP_2019	0.88	+0.0
2,293,708	+				+1.5
2,293,712	+		PP_2019	0.88	-0.4
2,293,712	+		PP_2019	0.88	+1.6
2,293,712	+		PP_2019	0.88	+0.6
2,293,712	+		PP_2019	0.88	-2.8
2,293,713	-		PP_2019	0.88	-3.3
2,293,713	-		PP_2019	0.88	-0.6
2,293,713	-		PP_2019	0.88	+1.2
2,293,763	+		PP_2019	0.90	+0.7
2,293,763	+		PP_2019	0.90	-0.2
2,293,767	-				+0.4
2,293,830	+				+0.8
2,293,830	+				-2.4
2,293,830	+				-2.2
2,293,830	+				-1.9
2,293,831	-				-1.6
2,293,831	-				+1.5
2,293,831	-				-2.9
2,294,036	+				-0.7
2,294,038	+				+1.1
2,294,039	-				+0.2
2,294,069	-		PP_2020	0.18	-3.9
2,294,069	-		PP_2020	0.18	-2.4
2,294,069	-		PP_2020	0.18	+0.1
2,294,069	-		PP_2020	0.18	-1.4
2,294,069	-		PP_2020	0.18	-1.5
2,294,104	+		PP_2020	0.28	-0.6
2,294,105	-		PP_2020	0.28	-1.9
2,294,290	+		PP_2020	0.80	+0.6
2,294,290	+		PP_2020	0.80	-1.6
2,294,291	-		PP_2020	0.81	-3.3
2,294,291	-		PP_2020	0.81	+0.7
2,294,291	-		PP_2020	0.81	-0.1
2,294,291	-		PP_2020	0.81	+0.1
2,294,291	-		PP_2020	0.81	-3.2
2,294,291	-		PP_2020	0.81	-1.0
2,294,412	+				-3.0
2,294,413	-				-0.9
2,294,435	+				-3.0
2,294,435	+				-1.1
2,294,439	+		PP_2021	0.10	+0.0
2,294,439	+		PP_2021	0.10	-1.4
2,294,439	+		PP_2021	0.10	+0.4
2,294,439	+		PP_2021	0.10	-1.3
2,294,439	+		PP_2021	0.10	-1.9
2,294,439	+		PP_2021	0.10	-1.6
2,294,439	+		PP_2021	0.10	-0.0
2,294,440	-		PP_2021	0.10	+0.9
2,294,440	-		PP_2021	0.10	-0.3
2,294,440	-		PP_2021	0.10	-2.6
2,294,440	-		PP_2021	0.10	-2.7
2,294,440	-		PP_2021	0.10	-2.5
2,294,685	+		PP_2021	0.32	-0.2
2,294,685	+		PP_2021	0.32	-3.1
2,294,704	-		PP_2021	0.34	-0.8
2,294,704	-		PP_2021	0.34	-1.7
2,294,796	-		PP_2021	0.42	-1.8
2,294,877	+		PP_2021	0.49	-0.6
2,294,878	-		PP_2021	0.49	-3.1
2,294,913	+		PP_2021	0.52	-0.1
2,294,913	+		PP_2021	0.52	-1.3
2,294,914	-		PP_2021	0.52	+0.1
2,294,914	-		PP_2021	0.52	+1.4
2,295,034	-		PP_2021	0.63	+0.5
2,295,186	+		PP_2021	0.76	+0.9
2,295,186	+		PP_2021	0.76	-1.1
2,295,186	+		PP_2021	0.76	+0.1
2,295,187	-		PP_2021	0.76	+0.1
2,295,367	+				-0.1
2,295,367	+				-1.3
2,295,367	+				+1.0
2,295,368	-				-1.9
2,295,368	-				-0.5
2,295,368	-				-2.4
2,295,472	-				+0.3
2,295,478	+				-1.4
2,295,570	-				-3.2
2,295,602	-		PP_5496	0.14	-2.4
2,295,686	+		PP_5496	0.61	+0.1
2,295,686	+		PP_5496	0.61	-0.9
2,295,687	-		PP_5496	0.62	-2.2
2,295,699	-		PP_5496	0.68	+0.0
2,296,057	-		PP_2023	0.28	+0.6
2,296,158	+				+2.5
2,296,158	+		PP_2023	0.45	-0.1
2,296,158	+		PP_2023	0.45	-0.1
2,296,158	+		PP_2023	0.45	-2.9
2,296,242	-		PP_2023	0.59	+2.0