Strain Fitness in Pseudomonas putida KT2440 around PP_1984

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,248,680	-		PP_1983	0.72	-2.5
2,248,680	-		PP_1983	0.72	-1.3
2,248,809	+		PP_1983	0.76	-0.4
2,248,809	+		PP_1983	0.76	-2.8
2,248,810	-		PP_1983	0.76	+0.3
2,248,810	-		PP_1983	0.76	+0.9
2,248,942	+		PP_1983	0.80	+3.1
2,248,942	+		PP_1983	0.80	-1.2
2,249,370	-				-1.8
2,249,439	+				-1.5
2,249,439	+				+0.5
2,249,459	+				+2.1
2,249,465	-				+0.5
2,249,602	+				+0.6
2,249,603	-				-1.4
2,249,603	-				-2.9
2,249,618	+				+0.5
2,249,618	+				-1.5
2,249,618	+				-0.0
2,249,619	-				+1.2
2,249,619	-				+1.0
2,249,642	+				-1.3
2,249,643	-				+1.3
2,249,643	-				-1.7
2,249,643	-				+0.1
2,249,643	-				+1.7
2,249,723	-				+0.2
2,249,723	-				-2.2
2,249,723	-				-1.1
2,249,723	-				-1.7
2,249,742	+				-0.9
2,249,743	-				-0.9
2,249,743	-				+0.8
2,249,743	-				+1.5
2,249,748	-		PP_1984	0.10	-0.5
2,249,748	-		PP_1984	0.10	-3.2
2,249,765	+		PP_1984	0.12	+0.2
2,249,765	+		PP_1984	0.12	-1.9
2,249,766	-		PP_1984	0.12	-2.5
2,249,868	+		PP_1984	0.24	-0.5
2,249,868	+		PP_1984	0.24	-0.2
2,249,869	-		PP_1984	0.24	-1.1
2,249,929	+		PP_1984	0.31	-0.6
2,249,929	+		PP_1984	0.31	-3.1
2,249,929	+		PP_1984	0.31	-0.0
2,249,929	+		PP_1984	0.31	-2.8
2,249,929	+		PP_1984	0.31	-1.3
2,249,930	-		PP_1984	0.31	-3.3
2,249,930	-		PP_1984	0.31	-1.1
2,249,930	-		PP_1984	0.31	-1.9
2,249,930	-		PP_1984	0.31	+1.1
2,250,179	+		PP_1984	0.59	+0.7
2,250,180	-		PP_1984	0.59	-2.1
2,250,180	-		PP_1984	0.59	-0.5
2,250,307	+		PP_1984	0.74	-0.4
2,250,334	-		PP_1984	0.77	-1.8
2,250,608	-				-0.5
2,250,619	+				-2.2
2,250,620	-				-0.8
2,250,642	+				-2.9
2,250,643	-				-1.3
2,250,643	-				-1.5
2,250,689	-				+2.5
2,250,689	-				-2.7
2,250,689	-				-0.3
2,250,749	-				-0.8
2,250,961	+		PP_1985	0.20	+1.0
2,250,994	+		PP_1985	0.23	-2.6
2,251,230	+		PP_1985	0.39	-1.5
2,251,398	+		PP_1985	0.51	-1.9
2,251,409	-		PP_1985	0.52	-0.5
2,251,427	-		PP_1985	0.53	-2.1