Strain Fitness in Pseudomonas putida KT2440 around PP_1975

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,237,025	+				-2.2
2,237,025	+				+0.9
2,237,028	+				+2.1
2,237,029	-				+0.3
2,237,029	-				-2.2
2,237,029	-				+1.3
2,237,140	-				-2.4
2,237,140	-				+0.9
2,237,277	+		PP_1975	0.16	-1.6
2,237,278	-		PP_1975	0.16	-0.2
2,237,286	+		PP_1975	0.16	-2.7
2,237,287	-		PP_1975	0.16	-2.1
2,237,359	+		PP_1975	0.21	+1.1
2,237,401	+		PP_1975	0.24	+2.7
2,237,403	+		PP_1975	0.24	-2.0
2,237,404	-		PP_1975	0.24	-2.9
2,237,404	-		PP_1975	0.24	-2.2
2,237,404	-		PP_1975	0.24	+0.9
2,237,470	+		PP_1975	0.28	-0.9
2,237,558	+		PP_1975	0.34	-1.4
2,237,558	+		PP_1975	0.34	-1.8
2,237,558	+		PP_1975	0.34	-1.3
2,237,558	+		PP_1975	0.34	+0.6
2,237,559	-		PP_1975	0.34	+0.5
2,237,559	-		PP_1975	0.34	-0.5
2,237,559	-		PP_1975	0.34	-0.2
2,237,561	+		PP_1975	0.34	-1.0
2,237,561	+		PP_1975	0.34	-0.3
2,237,561	+		PP_1975	0.34	-0.2
2,237,562	-		PP_1975	0.34	-1.1
2,237,664	+		PP_1975	0.41	-2.1
2,237,665	-		PP_1975	0.41	-2.4
2,237,672	+		PP_1975	0.41	-3.1
2,237,700	+		PP_1975	0.43	+0.8
2,237,701	-		PP_1975	0.43	+0.3
2,237,777	-		PP_1975	0.48	+0.2
2,237,959	-		PP_1975	0.60	+0.3
2,238,009	+		PP_1975	0.63	+1.1
2,238,010	-		PP_1975	0.63	-3.2
2,238,011	+				+1.5
2,238,011	+		PP_1975	0.63	-0.7
2,238,012	-		PP_1975	0.63	+0.7
2,238,029	+		PP_1975	0.64	+0.5
2,238,029	+		PP_1975	0.64	-1.7
2,238,029	-		PP_1975	0.64	+0.7
2,238,030	-		PP_1975	0.64	+0.4
2,238,030	-		PP_1975	0.64	-0.6
2,238,046	+		PP_1975	0.65	-2.6
2,238,047	-		PP_1975	0.65	-1.9
2,238,054	+		PP_1975	0.66	-2.6
2,238,054	+		PP_1975	0.66	-0.6
2,238,054	+		PP_1975	0.66	-1.7
2,238,054	+		PP_1975	0.66	-2.0
2,238,063	+		PP_1975	0.66	-2.1
2,238,064	-		PP_1975	0.66	-1.1
2,238,064	-		PP_1975	0.66	+0.8
2,238,500	-				-0.0
2,238,684	+				-0.8
2,238,808	+		PP_1976	0.20	-0.4
2,238,919	+		PP_1976	0.30	-2.4
2,238,920	-		PP_1976	0.30	-3.1
2,239,460	+		PP_1976	0.76	+0.8
2,239,461	-		PP_1976	0.76	-1.7
2,239,507	+		PP_1976	0.80	+0.6
2,239,508	-		PP_1976	0.80	-1.7
2,239,508	-		PP_1976	0.80	-2.3
2,239,508	-		PP_1976	0.80	+1.5
2,239,528	+		PP_1976	0.82	-1.7
2,239,547	-		PP_1976	0.84	-2.1