Strain Fitness in Pseudomonas putida KT2440 around PP_1959

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,217,951	+		PP_1958	0.73	+2.0
2,217,986	-		PP_1958	0.77	+1.1
2,217,986	-		PP_1958	0.77	+1.0
2,217,991	+		PP_1958	0.78	-2.5
2,217,991	+		PP_1958	0.78	-0.5
2,217,991	+		PP_1958	0.78	+1.9
2,217,991	+		PP_1958	0.78	-2.4
2,217,992	-		PP_1958	0.78	+1.2
2,217,992	-		PP_1958	0.78	+1.6
2,217,992	-		PP_1958	0.78	+1.7
2,218,038	+		PP_1958	0.83	+0.7
2,218,038	+		PP_1958	0.83	-0.1
2,218,038	+		PP_1958	0.83	+0.3
2,218,039	-		PP_1958	0.84	-1.8
2,218,070	+		PP_1958	0.87	+1.3
2,218,100	+				+2.0
2,218,100	+				+1.2
2,218,100	+				-0.8
2,218,100	+				+0.6
2,218,100	+				+2.1
2,218,101	-				+1.3
2,218,101	-				-2.2
2,218,114	+				+2.8
2,218,114	+				+0.9
2,218,115	-				+0.6
2,218,132	-				-0.4
2,218,132	-				+1.0
2,218,216	-				+0.8
2,218,216	-				+2.2
2,218,277	+				-2.2
2,218,287	+				+1.5
2,218,307	+				+1.5
2,218,308	-				+1.4
2,218,314	+				-0.7
2,218,314	+				+1.4
2,218,379	-				+1.2
2,218,396	-				+1.8
2,218,396	-				+0.5
2,218,408	+				+1.2
2,218,424	-				-0.3
2,218,546	-		PP_5495	0.30	+0.9
2,218,597	+		PP_5495	0.42	+1.7
2,218,618	+		PP_5495	0.47	-1.7
2,218,824	+				+1.6
2,218,901	+				-2.4
2,219,138	-		PP_1959	0.19	+0.8
2,219,232	+		PP_1959	0.27	+1.3
2,219,372	+		PP_1959	0.39	+0.5
2,219,415	+		PP_1959	0.43	+0.5
2,219,416	-		PP_1959	0.43	+1.9
2,219,496	+		PP_1959	0.50	-1.7
2,219,509	+		PP_1959	0.51	+0.4
2,219,648	-		PP_1959	0.63	+1.7
2,219,729	-		PP_1959	0.70	-0.8
2,219,927	-		PP_1959	0.87	-0.1
2,219,927	-		PP_1959	0.87	+1.0
2,219,927	-		PP_1959	0.87	+1.3
2,219,962	-		PP_1959	0.90	-0.1
2,219,998	+				+1.0
2,220,147	+				-0.8
2,220,159	+				+0.4
2,220,160	-				-0.5
2,220,177	+				-0.7
2,220,178	-				+0.9
2,220,178	-				+0.6
2,220,264	+				-0.7
2,220,265	-				-0.2
2,220,337	-				-0.8
2,220,386	+				+0.4
2,220,387	-				+0.1
2,220,419	+				+0.8
2,220,420	-				+1.5
2,220,426	+				+1.3
2,220,426	+				+0.9
2,220,450	+		PP_1960	0.11	-1.0
2,220,450	+		PP_1960	0.11	-1.0
2,220,450	+		PP_1960	0.11	+0.5
2,220,451	-		PP_1960	0.11	+2.3
2,220,451	-		PP_1960	0.11	-2.9
2,220,451	-		PP_1960	0.11	+1.1
2,220,451	-		PP_1960	0.11	+0.7
2,220,455	-		PP_1960	0.11	+1.0
2,220,566	-		PP_1960	0.20	+2.8
2,220,569	+		PP_1960	0.20	+0.6
2,220,798	-		PP_1960	0.37	+0.4
2,220,798	-		PP_1960	0.37	-1.3
2,220,811	-		PP_1960	0.38	-0.6
2,220,854	+		PP_1960	0.42	+0.9
2,220,858	-		PP_1960	0.42	-0.3
2,220,871	+		PP_1960	0.43	+1.3
2,220,926	+		PP_1960	0.47	-0.2
2,220,958	+		PP_1960	0.50	-1.7
2,221,069	-		PP_1960	0.58	+0.6