Strain Fitness in Pseudomonas putida KT2440 around PP_1952

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,207,733	-				+0.0
2,207,733	-				+0.1
2,207,835	+				+0.8
2,207,857	-				+0.2
2,207,862	+				-0.1
2,207,862	+				+1.2
2,207,862	+				+0.4
2,207,863	-				-0.2
2,208,013	-		PP_1951	0.27	+1.5
2,208,019	+		PP_1951	0.28	-0.9
2,208,025	+		PP_1951	0.29	-1.3
2,208,026	-		PP_1951	0.29	-0.5
2,208,026	-		PP_1951	0.29	+0.0
2,208,139	+		PP_1951	0.42	+2.5
2,208,140	-		PP_1951	0.42	+0.9
2,208,140	-		PP_1951	0.42	+0.7
2,208,153	-		PP_1951	0.44	+1.5
2,208,192	+		PP_1951	0.49	+0.5
2,208,192	+		PP_1951	0.49	+0.8
2,208,192	+		PP_1951	0.49	-0.2
2,208,193	-		PP_1951	0.49	+3.1
2,208,241	+		PP_1951	0.55	-0.5
2,208,259	+		PP_1951	0.57	-0.1
2,208,259	+		PP_1951	0.57	+0.8
2,208,345	+		PP_1951	0.67	+1.3
2,208,346	-		PP_1951	0.67	+0.9
2,208,346	-		PP_1951	0.67	+0.8
2,208,346	-		PP_1951	0.67	+1.7
2,208,530	+		PP_1951	0.89	+1.9
2,208,531	-		PP_1951	0.90	-0.5
2,208,615	-				-0.2
2,208,628	-				+2.1
2,208,633	-				+0.2
2,208,773	+				-1.1
2,209,002	-		PP_1952	0.33	+0.3
2,209,077	-		PP_1952	0.41	-0.4
2,209,084	-		PP_1952	0.42	+1.5
2,209,184	-		PP_1952	0.53	+0.7
2,209,184	-		PP_1952	0.53	+1.8
2,209,200	+		PP_1952	0.54	+0.6
2,209,256	+		PP_1952	0.60	+0.4
2,209,256	+		PP_1952	0.60	-1.5
2,209,256	+		PP_1952	0.60	-2.3
2,209,257	-		PP_1952	0.60	+2.5
2,209,257	-		PP_1952	0.60	+2.4
2,209,257	-		PP_1952	0.60	-1.5
2,209,257	-		PP_1952	0.60	-0.2
2,209,257	-		PP_1952	0.60	-0.2
2,209,257	-		PP_1952	0.60	+0.3
2,209,264	+		PP_1952	0.61	+0.5
2,209,265	-		PP_1952	0.61	+2.5
2,209,265	-		PP_1952	0.61	+1.3
2,209,270	-		PP_1952	0.62	-1.5
2,209,361	-		PP_1952	0.71	-0.1
2,209,361	-		PP_1952	0.71	+1.0
2,209,361	-		PP_1952	0.71	-1.8
2,209,364	+		PP_1952	0.72	-0.5
2,209,364	+		PP_1952	0.72	-0.3
2,209,365	-		PP_1952	0.72	+1.8
2,209,365	-		PP_1952	0.72	+1.1
2,209,365	-		PP_1952	0.72	+1.5
2,209,365	-		PP_1952	0.72	+1.2
2,209,385	+		PP_1952	0.74	+0.3
2,209,385	+		PP_1952	0.74	+0.8
2,209,385	+		PP_1952	0.74	+2.1
2,209,385	+		PP_1952	0.74	+0.3
2,209,385	+		PP_1952	0.74	-0.3
2,209,386	-		PP_1952	0.74	+0.6
2,209,430	+		PP_1952	0.79	-2.5
2,209,430	+		PP_1952	0.79	-1.7
2,209,430	+		PP_1952	0.79	+2.1
2,209,430	+		PP_1952	0.79	+0.4
2,209,431	-		PP_1952	0.79	+2.9
2,209,431	-		PP_1952	0.79	+1.0
2,209,456	+		PP_1952	0.81	-2.3
2,209,456	+		PP_1952	0.81	+1.9
2,209,456	+		PP_1952	0.81	+1.5
2,209,457	-		PP_1952	0.81	+0.8
2,209,457	-		PP_1952	0.81	+1.0
2,209,457	-		PP_1952	0.81	+0.2
2,209,457	-		PP_1952	0.81	+0.9
2,209,457	-		PP_1952	0.81	-0.9
2,209,457	-		PP_1952	0.81	+1.8
2,209,457	-		PP_1952	0.81	+1.4
2,209,457	-		PP_1952	0.81	-0.6
2,209,457	-		PP_1952	0.81	+0.7
2,209,457	-		PP_1952	0.81	+0.4
2,209,481	+		PP_1952	0.84	+1.6
2,209,497	+		PP_1952	0.86	+1.3
2,209,498	-		PP_1952	0.86	+2.1
2,209,541	-				-0.6
2,209,541	-				+0.6
2,209,562	+				+2.9
2,209,617	+				+1.9
2,209,621	+				+1.0
2,209,622	-				-1.7
2,209,738	-				-2.3
2,209,738	-				+1.1
2,209,829	+				-0.6
2,209,829	+				+0.1
2,209,829	+				+1.6
2,209,830	-				+0.5
2,209,830	-				-0.5
2,209,866	+		PP_1953	0.14	-1.1
2,209,866	+		PP_1953	0.14	+0.0
2,209,867	-		PP_1953	0.14	+1.1
2,210,001	+		PP_1953	0.30	-0.7
2,210,002	-		PP_1953	0.30	-0.8
2,210,002	-		PP_1953	0.30	-0.7
2,210,002	-		PP_1953	0.30	+0.2
2,210,124	+		PP_1953	0.45	+0.2
2,210,124	+		PP_1953	0.45	+1.8
2,210,281	+		PP_1953	0.65	+0.5
2,210,281	+		PP_1953	0.65	+1.2
2,210,281	+		PP_1953	0.65	+2.3
2,210,282	-		PP_1953	0.65	+2.0
2,210,282	-		PP_1953	0.65	+0.2
2,210,282	-		PP_1953	0.65	+0.6
2,210,282	-		PP_1953	0.65	+2.1
2,210,285	-		PP_1953	0.65	+1.8
2,210,347	+		PP_1953	0.73	-1.5
2,210,348	-		PP_1953	0.73	-1.7
2,210,348	-		PP_1953	0.73	+1.5
2,210,348	-		PP_1953	0.73	+0.2
2,210,348	-		PP_1953	0.73	+1.6
2,210,348	-		PP_1953	0.73	-2.0
2,210,348	-		PP_1953	0.73	+1.2
2,210,348	-		PP_1953	0.73	+1.1
2,210,563	+				+1.3
2,210,564	-				+1.8
2,210,564	-				-0.4
2,210,564	-				+0.8
2,210,564	-				+1.4
2,210,564	-				+1.1
2,210,585	+				+1.3
2,210,585	+				+1.0
2,210,585	+				+1.6
2,210,586	-				+1.7
2,210,586	-				+0.2
2,210,587	+				+2.2
2,210,587	+				-2.3
2,210,587	+				+0.9
2,210,587	+				-1.2
2,210,595	+				+0.9
2,210,595	+				+1.5
2,210,596	-				-1.3
2,210,596	-				+0.9
2,210,615	+				-0.6