Strain Fitness in Pseudomonas putida KT2440 around PP_1942

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,196,038	+				-0.5
2,196,113	-				+1.1
2,196,153	+				+0.7
2,196,154	-				+3.5
2,196,179	+				-1.9
2,196,180	-				+1.2
2,196,180	-				+0.5
2,196,275	+				+1.2
2,196,275	+				+2.5
2,196,275	+				-2.9
2,196,279	-				+1.0
2,196,303	+				-0.5
2,196,343	-				+0.3
2,196,347	+				+0.9
2,196,348	-				+1.5
2,196,389	-				+0.4
2,196,446	+				-1.0
2,196,447	-				+0.6
2,196,474	+		PP_1941	0.14	-2.3
2,196,475	-		PP_1941	0.15	+1.7
2,196,574	-		PP_1941	0.31	-0.1
2,196,574	-		PP_1941	0.31	-0.7
2,196,722	-		PP_1941	0.56	+1.3
2,196,766	+		PP_1941	0.63	+1.1
2,196,766	+		PP_1941	0.63	+1.9
2,196,766	+		PP_1941	0.63	+1.2
2,196,766	+		PP_1941	0.63	+1.6
2,196,766	+		PP_1941	0.63	+1.1
2,196,889	+		PP_1941	0.83	-2.4
2,196,890	-		PP_1941	0.83	-0.7
2,196,894	-		PP_1941	0.84	-0.6
2,196,990	-				+1.0
2,196,994	-				+1.9
2,197,233	+		PP_1942	0.21	+2.1
2,197,246	-		PP_1942	0.23	-1.4
2,197,410	+		PP_1942	0.40	+1.6
2,197,410	+		PP_1942	0.40	+1.8
2,197,423	-		PP_1942	0.41	-0.3
2,197,433	+		PP_1942	0.42	-0.5
2,197,434	-		PP_1942	0.42	+2.1
2,197,434	-		PP_1942	0.42	-0.1
2,197,434	-		PP_1942	0.42	+1.2
2,197,531	+		PP_1942	0.52	+0.0
2,197,531	+		PP_1942	0.52	+1.0
2,197,536	+		PP_1942	0.53	-0.5
2,197,548	+		PP_1942	0.54	+1.2
2,197,549	-		PP_1942	0.54	-1.7
2,197,554	-		PP_1942	0.55	+1.3
2,197,683	-		PP_1942	0.68	+0.8
2,197,782	+		PP_1942	0.79	+2.0
2,197,783	-		PP_1942	0.79	+0.6
2,197,849	+		PP_1942	0.85	-0.1
2,197,849	+		PP_1942	0.85	+1.0
2,197,862	+		PP_1942	0.87	-2.9
2,197,862	+		PP_1942	0.87	-1.3
2,197,862	+		PP_1942	0.87	+1.5
2,197,863	-		PP_1942	0.87	+0.6
2,197,863	-		PP_1942	0.87	-2.0
2,197,971	+				+1.9
2,198,004	+				-0.3
2,198,010	+				+1.9
2,198,029	+				-1.9
2,198,044	+				+1.2
2,198,045	-				-2.7
2,198,045	-				+0.3
2,198,052	+				-0.1
2,198,083	+				-1.8
2,198,096	+				+2.5
2,198,097	-				+0.1
2,198,097	-				+3.5
2,198,122	+				-0.4
2,198,131	+				+3.2
2,198,131	+				-0.7
2,198,147	+				-0.7
2,198,150	+				+1.0
2,198,295	-				-2.7
2,198,513	-		PP_1943	0.32	+0.3
2,198,758	-		PP_1943	0.60	+0.8
2,198,940	-		PP_1943	0.81	-2.6
2,198,940	-		PP_1943	0.81	+0.7
2,198,962	+		PP_1943	0.84	+1.4
2,198,962	+		PP_1943	0.84	+2.9
2,198,963	-		PP_1943	0.84	+0.0
2,198,963	-		PP_1943	0.84	+1.7
2,198,963	-		PP_1943	0.84	-2.9