Strain Fitness in Pseudomonas putida KT2440 around PP_1923

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,168,743	+				+3.7
2,168,992	+		PP_1922	0.24	+1.2
2,169,244	-		PP_1922	0.54	-0.1
2,169,250	+		PP_1922	0.54	+1.7
2,169,314	+		PP_1922	0.62	+0.3
2,169,315	-		PP_1922	0.62	+0.9
2,169,332	-		PP_1922	0.64	+1.0
2,169,361	+		PP_1922	0.67	+1.2
2,169,362	-		PP_1922	0.68	+2.7
2,169,608	-				+0.2
2,169,612	+				+0.9
2,169,614	+				-0.4
2,169,617	-				-2.4
2,169,725	+				-2.3
2,169,725	+				+0.0
2,169,725	+				+0.7
2,169,725	+				-1.4
2,169,726	-				-0.7
2,169,726	-				-0.2
2,169,726	-				-0.8
2,169,726	-				-2.3
2,169,742	-				+0.6
2,169,742	-				+0.4
2,169,857	+		PP_1923	0.15	+0.6
2,169,857	+		PP_1923	0.15	+2.0
2,169,857	+		PP_1923	0.15	+0.2
2,169,857	+		PP_1923	0.15	+0.6
2,169,858	-				+1.1
2,169,858	-		PP_1923	0.15	-1.3
2,169,858	-		PP_1923	0.15	-2.8
2,169,858	-		PP_1923	0.15	+0.1
2,169,858	-		PP_1923	0.15	-1.9
2,169,858	-		PP_1923	0.15	-1.2
2,169,858	-		PP_1923	0.15	+0.9
2,169,858	-		PP_1923	0.15	-0.6
2,169,858	-		PP_1923	0.15	-2.4
2,169,862	+		PP_1923	0.15	-0.1
2,169,862	+		PP_1923	0.15	+0.6
2,169,862	+		PP_1923	0.15	+0.8
2,169,863	-		PP_1923	0.16	+1.4
2,169,863	-		PP_1923	0.16	-0.8
2,169,863	-		PP_1923	0.16	+0.4
2,169,863	-		PP_1923	0.16	+0.7
2,169,863	-		PP_1923	0.16	-0.2
2,169,863	-		PP_1923	0.16	+2.1
2,169,863	-		PP_1923	0.16	-3.2
2,169,863	-		PP_1923	0.16	+0.7
2,169,864	+		PP_1923	0.16	-1.9
2,169,864	+		PP_1923	0.16	-2.3
2,169,865	-		PP_1923	0.16	+0.4
2,169,865	-		PP_1923	0.16	+0.3
2,169,865	-		PP_1923	0.16	+0.6
2,169,865	-		PP_1923	0.16	+0.7
2,169,865	-		PP_1923	0.16	-1.8
2,169,865	-		PP_1923	0.16	-2.4
2,169,865	-		PP_1923	0.16	+0.7
2,169,865	-		PP_1923	0.16	+2.0
2,169,866	+		PP_1923	0.16	-0.4
2,169,866	+		PP_1923	0.16	-3.1
2,169,866	+		PP_1923	0.16	-0.4
2,169,867	-		PP_1923	0.16	+0.2
2,169,867	-		PP_1923	0.16	+0.4
2,169,867	-		PP_1923	0.16	+0.5
2,169,867	-		PP_1923	0.16	-1.4
2,169,867	-		PP_1923	0.16	+1.3
2,169,867	-		PP_1923	0.16	-1.1
2,169,867	-		PP_1923	0.16	+0.6
2,169,867	-		PP_1923	0.16	+1.1
2,169,897	-		PP_1923	0.20	-1.6
2,169,921	+		PP_1923	0.23	+0.4
2,169,922	-		PP_1923	0.23	+0.4
2,169,922	-				+0.4
2,169,928	-		PP_1923	0.24	+1.4
2,169,998	+		PP_1923	0.33	+0.5
2,169,998	+		PP_1923	0.33	+2.0
2,170,032	-		PP_1923	0.37	+0.8
2,170,050	+		PP_1923	0.39	-1.2
2,170,050	+		PP_1923	0.39	+0.0
2,170,051	-		PP_1923	0.39	+1.7
2,170,051	-		PP_1923	0.39	-0.4
2,170,054	+		PP_1923	0.40	-0.6
2,170,054	+		PP_1923	0.40	+0.4
2,170,054	+		PP_1923	0.40	-0.1
2,170,054	+		PP_1923	0.40	-0.8
2,170,055	-		PP_1923	0.40	-2.7
2,170,055	-		PP_1923	0.40	+0.3
2,170,055	-		PP_1923	0.40	-0.5
2,170,143	+		PP_1923	0.51	-0.2
2,170,144	-		PP_1923	0.51	+0.1
2,170,144	-		PP_1923	0.51	-1.2
2,170,286	+		PP_1923	0.69	+0.3
2,170,286	+		PP_1923	0.69	+1.0
2,170,286	+		PP_1923	0.69	-1.2
2,170,287	-		PP_1923	0.69	+1.4
2,170,387	+		PP_1923	0.82	+1.2
2,170,387	+		PP_1923	0.82	-1.1
2,170,387	+		PP_1923	0.82	+1.0
2,170,387	+		PP_1923	0.82	+0.9
2,170,387	+		PP_1923	0.82	+0.2
2,170,388	-		PP_1923	0.82	+0.1
2,170,388	-				+0.4
2,170,388	-		PP_1923	0.82	+2.2
2,170,391	+		PP_1923	0.83	+1.5
2,170,391	+		PP_1923	0.83	+1.0
2,170,391	+		PP_1923	0.83	-0.2
2,170,392	-		PP_1923	0.83	-2.2
2,170,412	-		PP_1923	0.85	-0.3
2,170,452	-				-0.1
2,170,468	+				-0.4
2,170,468	+				-1.8
2,170,468	+				+0.6
2,170,469	-				-0.6
2,170,549	+				-2.6
2,170,549	+				-0.1
2,170,550	-				+0.8
2,170,581	+				-1.3
2,170,581	+				-0.6
2,170,582	-				+0.1
2,170,607	+				+0.2
2,170,607	+				-0.4
2,170,608	-				+0.5
2,170,621	+				+0.6
2,170,621	+				-2.4
2,170,621	+				+1.6
2,170,621	+				-2.6
2,170,621	+				+1.0
2,170,622	-				-1.6
2,170,622	-				-0.2
2,170,622	-				+0.1
2,170,622	-				+1.8
2,170,653	+				-1.2
2,170,653	+				+1.0
2,170,654	-				-1.2
2,170,779	+		PP_5484	0.15	+0.4
2,170,780	-		PP_5484	0.15	-0.2
2,170,817	+		PP_5484	0.20	-1.4
2,170,817	+		PP_5484	0.20	-0.3
2,170,818	-		PP_5484	0.20	+0.7
2,170,818	-		PP_5484	0.20	+0.3
2,170,818	-		PP_5484	0.20	+0.7
2,170,818	-		PP_5484	0.20	+1.4
2,170,818	-		PP_5484	0.20	+0.8
2,170,826	+		PP_5484	0.21	+0.3
2,170,826	+		PP_5484	0.21	-0.8
2,170,827	-		PP_5484	0.21	-2.6
2,170,874	+		PP_5484	0.27	-1.8
2,170,874	+		PP_5484	0.27	+1.7
2,170,875	-		PP_5484	0.27	-0.2
2,170,878	-		PP_5484	0.27	-0.6
2,170,878	-		PP_5484	0.27	-2.5
2,170,885	+		PP_5484	0.28	-3.1
2,170,885	+		PP_5484	0.28	-0.0
2,170,886	-		PP_5484	0.28	-0.9
2,170,886	-		PP_5484	0.28	-2.8
2,170,886	-		PP_5484	0.28	+1.2
2,170,886	-		PP_5484	0.28	-1.0
2,171,035	+		PP_5484	0.47	+1.5
2,171,035	+		PP_5484	0.47	+0.4
2,171,035	+		PP_5484	0.47	-0.7
2,171,035	+		PP_5484	0.47	-0.3
2,171,035	+		PP_5484	0.47	+1.6
2,171,035	+		PP_5484	0.47	+1.7
2,171,035	+		PP_5484	0.47	+2.0
2,171,035	+		PP_5484	0.47	-0.7
2,171,036	-		PP_5484	0.47	+0.7
2,171,036	-		PP_5484	0.47	+1.9
2,171,036	-		PP_5484	0.47	+0.4
2,171,083	+		PP_5484	0.53	-0.1
2,171,083	+		PP_5484	0.53	+1.2
2,171,083	+		PP_5484	0.53	-0.9
2,171,084	-		PP_5484	0.53	-1.8
2,171,084	-		PP_5484	0.53	+1.4
2,171,103	+		PP_5484	0.55	+0.1
2,171,112	-		PP_5484	0.56	-3.1
2,171,112	-		PP_5484	0.56	+1.4
2,171,160	+		PP_5484	0.62	+1.0
2,171,176	+		PP_5484	0.64	+1.2
2,171,176	+		PP_5484	0.64	-0.7
2,171,176	+				+1.4
2,171,176	+		PP_5484	0.64	-0.1
2,171,176	+		PP_5484	0.64	+0.2
2,171,176	+		PP_5484	0.64	-1.8
2,171,176	+		PP_5484	0.64	-2.6
2,171,177	-		PP_5484	0.64	-0.8
2,171,216	+		PP_5484	0.69	+2.1
2,171,216	+		PP_5484	0.69	+0.1
2,171,217	-		PP_5484	0.69	+0.7
2,171,373	+		PP_5484	0.88	+0.6
2,171,374	-		PP_5484	0.89	+0.2
2,171,377	-		PP_5484	0.89	-0.8
2,171,515	-				-0.1
2,171,515	-				+0.9