Strain Fitness in Pseudomonas putida KT2440 around PP_1835

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,058,051	+		PP_1833	0.46	-3.3
2,058,051	+		PP_1833	0.46	+1.6
2,058,098	-		PP_1833	0.61	-2.6
2,058,104	+		PP_1833	0.63	-1.4
2,058,104	+		PP_1833	0.63	-0.2
2,058,130	+		PP_1833	0.72	-0.7
2,058,184	+				+1.3
2,058,267	+				-2.8
2,058,377	+				+1.8
2,058,377	+				+0.6
2,058,377	+				-1.9
2,058,377	+				+0.0
2,058,377	+				+0.3
2,058,433	+				-1.9
2,058,433	+				+0.0
2,058,434	-				+1.4
2,058,434	-				+0.6
2,058,450	+				-0.5
2,058,450	+				+0.1
2,058,451	-				+1.0
2,058,451	-				+2.3
2,058,451	-				-1.5
2,058,591	+		PP_1834	0.27	+1.0
2,058,591	+		PP_1834	0.27	+0.5
2,058,629	-		PP_1834	0.34	+0.2
2,058,629	-		PP_1834	0.34	+0.8
2,058,854	-		PP_1834	0.77	-1.3
2,059,133	-		PP_1835	0.18	-1.9
2,059,177	+		PP_1835	0.27	+0.3
2,059,177	+		PP_1835	0.27	+0.4
2,059,178	-		PP_1835	0.27	-2.8
2,059,179	-		PP_1835	0.27	-0.7
2,059,262	-		PP_1835	0.43	-1.9
2,059,262	-		PP_1835	0.43	+0.6
2,059,262	-		PP_1835	0.43	+0.6
2,059,262	-		PP_1835	0.43	-2.1
2,059,262	-		PP_1835	0.43	-0.7
2,059,315	-		PP_1835	0.53	-1.9
2,059,368	+		PP_1835	0.63	+1.1
2,059,369	-		PP_1835	0.63	-1.9
2,059,411	+		PP_1835	0.71	-0.6
2,059,411	+		PP_1835	0.71	+1.2
2,059,411	+		PP_1835	0.71	+0.3
2,059,411	+		PP_1835	0.71	-0.2
2,059,412	-		PP_1835	0.71	-3.2
2,059,412	-		PP_1835	0.71	+1.1
2,059,412	-		PP_1835	0.71	-0.5
2,059,412	-		PP_1835	0.71	-0.5
2,059,412	-		PP_1835	0.71	-0.7
2,059,491	-		PP_1835	0.86	-2.9
2,059,567	+				-2.3
2,059,610	-				-0.3
2,059,634	+				-1.7
2,059,895	-		PP_1836	0.22	-0.9
2,060,238	+		PP_1836	0.58	+0.4
2,060,238	+		PP_1836	0.58	-2.4
2,060,506	+		PP_1836	0.87	-1.6
2,060,506	+		PP_1836	0.87	-0.7