Strain Fitness in Pseudomonas putida KT2440 around PP_1833

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,056,968	+		PP_1831	0.76	+0.4
2,056,969	-		PP_1831	0.76	-0.9
2,057,085	-		PP_1831	0.86	+0.0
2,057,127	-		PP_1831	0.89	+1.3
2,057,135	+				-0.4
2,057,173	+				+2.3
2,057,174	-				+1.1
2,057,174	-				+0.6
2,057,207	-				-2.1
2,057,329	-		PP_1832	0.15	-0.3
2,057,329	-		PP_1832	0.15	-0.7
2,057,428	+		PP_1832	0.34	-0.3
2,057,602	+		PP_1832	0.66	-1.1
2,057,602	+		PP_1832	0.66	-3.1
2,057,602	+		PP_1832	0.66	-0.2
2,057,603	-		PP_1832	0.66	-1.1
2,057,676	+		PP_1832	0.80	-2.4
2,057,676	+		PP_1832	0.80	-1.8
2,057,676	+		PP_1832	0.80	-1.1
2,057,676	+		PP_1832	0.80	-2.9
2,057,677	-		PP_1832	0.80	-0.4
2,057,677	-		PP_1832	0.80	-1.1
2,057,705	-		PP_1832	0.85	-3.0
2,057,705	-		PP_1832	0.85	+0.8
2,057,705	-		PP_1832	0.85	+0.2
2,057,705	-		PP_1832	0.85	+0.3
2,057,783	-				+0.6
2,057,821	+				-3.1
2,057,822	-				+0.5
2,057,822	-				+0.9
2,057,822	-				+0.3
2,057,842	-				-2.8
2,057,842	-				+1.3
2,057,865	+				-0.7
2,057,865	+				-3.5
2,057,866	-				-0.3
2,057,866	-				-2.7
2,057,904	+				-1.5
2,057,904	+				+0.9
2,057,904	+				+1.3
2,057,904	+				-2.6
2,057,905	-				-3.5
2,057,905	-				-0.9
2,057,905	-				-0.2
2,057,920	-				-2.9
2,058,051	+		PP_1833	0.46	-3.3
2,058,051	+		PP_1833	0.46	+1.6
2,058,098	-		PP_1833	0.61	-2.6
2,058,104	+		PP_1833	0.63	-1.4
2,058,104	+		PP_1833	0.63	-0.2
2,058,130	+		PP_1833	0.72	-0.7
2,058,184	+				+1.3
2,058,267	+				-2.8
2,058,377	+				+1.8
2,058,377	+				+0.6
2,058,377	+				-1.9
2,058,377	+				+0.0
2,058,377	+				+0.3
2,058,433	+				-1.9
2,058,433	+				+0.0
2,058,434	-				+1.4
2,058,434	-				+0.6
2,058,450	+				-0.5
2,058,450	+				+0.1
2,058,451	-				+1.0
2,058,451	-				+2.3
2,058,451	-				-1.5
2,058,591	+		PP_1834	0.27	+1.0
2,058,591	+		PP_1834	0.27	+0.5
2,058,629	-		PP_1834	0.34	+0.2
2,058,629	-		PP_1834	0.34	+0.8
2,058,854	-		PP_1834	0.77	-1.3
2,059,133	-		PP_1835	0.18	-1.9
2,059,177	+		PP_1835	0.27	+0.3
2,059,177	+		PP_1835	0.27	+0.4
2,059,178	-		PP_1835	0.27	-2.8
2,059,179	-		PP_1835	0.27	-0.7