Strain Fitness in Pseudomonas putida KT2440 around PP_1818

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,042,645	-				+1.6
2,042,693	+				-0.5
2,042,693	+				+1.3
2,042,694	-				-0.4
2,042,694	-				+1.6
2,042,694	-				-2.0
2,042,694	-				-2.9
2,042,694	-				-0.7
2,042,694	-				-2.2
2,042,759	-				+0.1
2,042,759	-				-1.9
2,042,759	-				-1.5
2,042,991	+		PP_1817	0.34	+1.0
2,042,992	-		PP_1817	0.34	+0.1
2,043,109	-		PP_1817	0.49	-1.7
2,043,109	-		PP_1817	0.49	+0.3
2,043,176	-		PP_1817	0.58	-1.3
2,043,201	+				-0.7
2,043,202	-		PP_1817	0.62	-0.4
2,043,256	-		PP_1817	0.69	+0.6
2,043,328	-		PP_1817	0.78	-0.9
2,043,420	+				+1.3
2,043,420	+				-3.4
2,043,420	+				-1.0
2,043,421	-				-0.1
2,043,563	+				-0.7
2,043,563	+				-0.5
2,043,564	-				-3.0
2,043,667	-				-3.2
2,043,723	+		PP_1818	0.11	-0.2
2,043,724	-		PP_1818	0.12	-1.1
2,043,730	-		PP_1818	0.12	+0.2
2,043,753	+		PP_1818	0.15	-0.6
2,043,753	+		PP_1818	0.15	-0.8
2,043,754	-		PP_1818	0.16	+0.2
2,043,766	+		PP_1818	0.17	-3.9
2,043,878	-		PP_1818	0.32	-2.0
2,043,888	-		PP_1818	0.34	-2.3
2,043,994	+		PP_1818	0.48	-0.3
2,044,131	+		PP_1818	0.66	+1.1
2,044,132	-		PP_1818	0.66	+0.2
2,044,155	+		PP_1818	0.69	-0.5
2,044,191	+		PP_1818	0.74	-1.7
2,044,191	+		PP_1818	0.74	-1.5
2,044,192	-		PP_1818	0.74	-2.1
2,044,192	-		PP_1818	0.74	-0.7
2,044,202	+		PP_1818	0.76	-1.7
2,044,203	-		PP_1818	0.76	+0.1
2,044,203	-		PP_1818	0.76	+0.7
2,044,220	-				-0.7
2,044,263	+		PP_1818	0.84	-0.4
2,044,274	+		PP_1818	0.85	+0.7
2,044,570	+				-0.3
2,044,609	-				-0.7
2,044,623	-				-1.2
2,044,623	-				-0.5
2,044,628	+				-1.2
2,044,629	-				+0.6
2,044,684	+				-0.6
2,044,685	-				+1.5
2,044,685	-				-1.7
2,044,685	-				-1.0
2,044,685	-				-0.4
2,044,685	-				-1.6
2,044,685	-				-1.3
2,044,685	-				-0.7
2,044,688	+				+0.7
2,044,688	+				-1.7
2,044,688	+				+1.2
2,044,698	+				+0.4
2,044,699	-				-0.7
2,044,732	-				-1.3
2,044,965	+				-0.9
2,044,966	-				-0.3
2,045,111	+		PP_1819	0.17	-2.0
2,045,246	+		PP_1819	0.24	+0.3
2,045,247	-		PP_1819	0.24	-0.3
2,045,356	-		PP_1819	0.29	+0.2
2,045,356	-		PP_1819	0.29	-1.7