Strain Fitness in Pseudomonas putida KT2440 around PP_1811

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,037,377	-				-2.7
2,037,432	+				-1.1
2,037,432	+				+0.3
2,037,432	+				-0.8
2,037,432	+				+0.4
2,037,433	-				-1.5
2,037,576	+				+0.4
2,037,576	+				-0.4
2,037,577	-				-2.4
2,037,669	+		PP_5478	0.23	-2.5
2,037,669	+		PP_5478	0.23	+0.1
2,037,719	+		PP_5478	0.41	-2.1
2,037,719	+		PP_5478	0.41	+0.1
2,037,736	-		PP_5478	0.47	-1.3
2,037,762	+		PP_5478	0.57	+1.2
2,037,762	+		PP_5478	0.57	+0.2
2,037,763	-		PP_5478	0.57	-0.2
2,037,763	-		PP_5478	0.57	-0.2
2,037,763	-		PP_5478	0.57	-3.0
2,037,883	+				+1.2
2,037,883	+				-0.2
2,037,884	-				+0.4
2,037,884	-				+0.7
2,037,884	-				-0.4
2,037,884	-				-1.8
2,037,896	+				-0.3
2,037,896	+				-0.5
2,037,897	-				-2.5
2,037,897	-				+1.3
2,037,897	-				+0.3
2,037,945	+				+1.6
2,037,971	+				-0.3
2,037,971	+				-0.7
2,038,004	+				-0.0
2,038,004	+				+1.7
2,038,005	-				+0.7
2,038,031	+				+1.3
2,038,032	-				+1.3
2,038,137	+				-1.0
2,038,137	+				-3.4
2,038,137	+				+2.0
2,038,137	+				+4.3
2,038,137	+				+1.9
2,038,137	+				-2.0
2,038,138	-				-2.1
2,038,311	+				-0.7
2,038,338	+				-1.7
2,038,338	+				-1.3
2,038,339	-				-0.4
2,038,339	-				-0.0
2,038,339	-				+0.3
2,038,382	+				+0.1
2,038,383	-				-0.4
2,038,465	+		PP_1811	0.11	-1.5
2,038,466	-		PP_1811	0.11	-1.6
2,038,466	-		PP_1811	0.11	-1.5
2,038,466	-		PP_1811	0.11	-2.0
2,038,466	-		PP_1811	0.11	+0.1
2,038,490	+		PP_1811	0.13	-3.3
2,038,490	+		PP_1811	0.13	-2.4
2,038,491	-		PP_1811	0.13	-1.9
2,038,491	-		PP_1811	0.13	-1.5
2,038,517	-		PP_1811	0.16	-0.7
2,038,627	-		PP_1811	0.25	-1.2
2,038,644	+		PP_1811	0.27	-1.5
2,038,644	+		PP_1811	0.27	+0.2
2,038,660	-		PP_1811	0.28	-2.9
2,038,660	-		PP_1811	0.28	-0.1
2,038,749	+		PP_1811	0.36	-1.9
2,038,749	+		PP_1811	0.36	-3.4
2,039,097	+		PP_1811	0.66	+0.0
2,039,097	+				+3.5
2,039,098	-		PP_1811	0.67	-3.1
2,039,098	-		PP_1811	0.67	-1.9
2,039,098	-		PP_1811	0.67	+0.2
2,039,126	+		PP_1811	0.69	-2.4
2,039,126	+		PP_1811	0.69	-0.5
2,039,127	-		PP_1811	0.69	+0.5
2,039,151	+		PP_1811	0.71	-1.7
2,039,151	+		PP_1811	0.71	-0.1
2,039,154	+		PP_1811	0.71	+0.5
2,039,154	+		PP_1811	0.71	-0.8
2,039,155	-		PP_1811	0.72	-0.0
2,039,155	-		PP_1811	0.72	-0.1
2,039,155	-		PP_1811	0.72	-0.6
2,039,155	-		PP_1811	0.72	+0.6
2,039,307	+		PP_1811	0.85	+1.8
2,039,336	+		PP_1811	0.87	-2.6
2,039,581	-				-1.0
2,039,632	+		PP_1812	0.15	-2.4
2,039,688	+		PP_1812	0.43	-0.9
2,039,689	-		PP_1812	0.44	-1.3
2,039,811	+				-0.5
2,039,820	-				+1.4
2,039,917	-				+2.1
2,040,072	+		PP_1813	0.51	-0.5
2,040,120	+		PP_1813	0.65	+0.8
2,040,121	-		PP_1813	0.65	-0.1
2,040,189	-		PP_1813	0.86	+0.0
2,040,235	+				+0.4
2,040,235	+				+0.0
2,040,236	-				-1.7
2,040,313	-		PP_1814	0.23	-2.0
2,040,313	-		PP_1814	0.23	+1.9
2,040,322	+		PP_1814	0.29	+0.1
2,040,322	+		PP_1814	0.29	+0.6
2,040,322	+		PP_1814	0.29	+0.3
2,040,323	-		PP_1814	0.29	-2.0
2,040,409	+		PP_1814	0.80	+0.7
2,040,409	+		PP_1814	0.80	-0.3
2,040,431	+				-1.6
2,040,454	+				+1.4
2,040,477	+				+2.1