Strain Fitness in Pseudomonas putida KT2440 around PP_1804

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,026,259	+				+5.2
2,026,259	+				+5.5
2,026,260	-				+5.1
2,026,260	-				+5.1
2,026,260	-				+5.9
2,026,260	-				+3.4
2,026,260	-				+5.2
2,026,260	-				+4.8
2,026,260	-				+5.3
2,026,266	+				+6.8
2,026,267	-				+5.9
2,026,323	+				+4.5
2,026,323	+				+5.0
2,026,377	+		PP_1803	0.14	+3.4
2,026,448	+		PP_1803	0.21	+4.9
2,026,449	-		PP_1803	0.21	+4.5
2,026,449	-		PP_1803	0.21	+4.6
2,026,472	+				+4.8
2,026,472	+		PP_1803	0.24	+5.3
2,026,472	+		PP_1803	0.24	+4.7
2,026,473	-		PP_1803	0.24	+5.1
2,026,473	-		PP_1803	0.24	+5.5
2,026,473	-		PP_1803	0.24	+6.0
2,026,473	-		PP_1803	0.24	+5.2
2,026,478	+		PP_1803	0.24	+4.7
2,026,478	+		PP_1803	0.24	+4.7
2,026,478	+		PP_1803	0.24	+3.7
2,026,478	+		PP_1803	0.24	+4.9
2,026,478	+		PP_1803	0.24	+3.1
2,026,478	+		PP_1803	0.24	+4.9
2,026,478	+		PP_1803	0.24	+5.9
2,026,478	+				+4.5
2,026,478	+		PP_1803	0.24	+4.7
2,026,478	+		PP_1803	0.24	+5.2
2,026,479	-		PP_1803	0.24	+4.5
2,026,479	-		PP_1803	0.24	+4.2
2,026,479	-		PP_1803	0.24	+5.4
2,026,479	-		PP_1803	0.24	+5.4
2,026,479	-		PP_1803	0.24	+4.1
2,026,479	-		PP_1803	0.24	+5.5
2,026,479	-		PP_1803	0.24	+5.8
2,026,654	-		PP_1803	0.42	+5.5
2,026,676	-		PP_1803	0.45	+4.0
2,026,751	+		PP_1803	0.52	+6.8
2,026,752	-		PP_1803	0.52	+6.0
2,026,769	-		PP_1803	0.54	+7.2
2,026,800	+		PP_1803	0.57	+4.5
2,026,800	+		PP_1803	0.57	+4.3
2,026,800	+		PP_1803	0.57	+5.4
2,026,800	+		PP_1803	0.57	+5.9
2,026,801	-		PP_1803	0.57	+4.7
2,026,801	-		PP_1803	0.57	+4.6
2,026,801	-		PP_1803	0.57	+4.7
2,026,826	+		PP_1803	0.60	+5.8
2,026,826	+		PP_1803	0.60	+4.5
2,026,826	+		PP_1803	0.60	+5.1
2,026,827	-		PP_1803	0.60	+6.2
2,026,827	-		PP_1803	0.60	+5.9
2,026,899	+		PP_1803	0.67	+5.7
2,026,899	+		PP_1803	0.67	+4.9
2,026,979	+		PP_1803	0.76	+5.1
2,026,979	+		PP_1803	0.76	+5.6
2,026,980	-		PP_1803	0.76	+5.5
2,026,980	-		PP_1803	0.76	+6.0
2,026,980	-		PP_1803	0.76	+5.8
2,027,060	+		PP_1803	0.84	+3.5
2,027,061	-		PP_1803	0.84	+6.5
2,027,108	+		PP_1803	0.89	+5.0
2,027,109	-		PP_1803	0.89	+5.0
2,027,109	-		PP_1803	0.89	+6.5
2,027,135	+				+5.3
2,027,135	+				+4.1
2,027,215	+				+7.5
2,027,216	-				+5.7
2,027,216	-				+4.0
2,027,239	+				+3.3
2,027,239	+				+5.3
2,027,239	+				+5.8
2,027,275	-				+5.8
2,027,315	+		PP_1804	0.10	+7.4
2,027,315	+		PP_1804	0.10	+5.2
2,027,315	+		PP_1804	0.10	+3.9
2,027,325	-		PP_1804	0.11	+7.5
2,027,465	-		PP_1804	0.25	+5.6
2,027,628	+		PP_1804	0.41	+5.5
2,027,628	+		PP_1804	0.41	+5.6
2,027,629	-		PP_1804	0.42	+7.3
2,027,727	+		PP_1804	0.51	+6.0
2,027,728	-		PP_1804	0.51	+6.6
2,027,771	-		PP_1804	0.56	+5.7
2,027,771	-		PP_1804	0.56	+5.0
2,027,771	-		PP_1804	0.56	+7.4
2,027,822	+		PP_1804	0.61	+4.7
2,027,823	-		PP_1804	0.61	+6.0
2,027,823	-		PP_1804	0.61	+5.6
2,027,906	-		PP_1804	0.69	+7.2
2,027,908	+		PP_1804	0.69	+6.4
2,027,909	-		PP_1804	0.69	+7.2
2,027,924	-		PP_1804	0.71	+3.9
2,027,926	+		PP_1804	0.71	+4.9
2,027,926	+		PP_1804	0.71	+5.6
2,027,939	-		PP_1804	0.72	+6.6
2,027,997	+		PP_1804	0.78	+5.7
2,027,998	-		PP_1804	0.78	+5.9
2,028,021	+		PP_1804	0.81	+3.1
2,028,022	-		PP_1804	0.81	+4.9
2,028,022	-		PP_1804	0.81	+4.8
2,028,022	-		PP_1804	0.81	+5.3
2,028,022	-		PP_1804	0.81	+5.2
2,028,027	+		PP_1804	0.81	+6.5
2,028,080	+		PP_1804	0.86	+4.8
2,028,084	-		PP_1804	0.87	+5.8
2,028,084	-		PP_1804	0.87	+5.2
2,028,119	-				+5.7
2,028,162	+				+5.1
2,028,162	+				+4.1
2,028,163	-				+6.3
2,028,176	-				+5.2
2,028,192	+				+4.8
2,028,192	+				+2.6
2,028,193	-				+5.6
2,028,193	-				+5.6
2,028,214	-				+4.5
2,028,214	-				+4.7
2,028,214	-				+6.5
2,028,214	-				+5.2
2,028,214	-				+5.9
2,028,240	+				-0.8
2,028,241	-				+5.8
2,028,241	-				+5.6
2,028,241	-				+6.1
2,028,351	+				+4.2
2,028,352	-				+6.1
2,028,355	+				+5.4
2,028,355	+				+5.4
2,028,355	+				+6.1
2,028,355	+				+4.9
2,028,355	+				+6.6
2,028,355	+				+6.8
2,028,356	-				+5.9
2,028,356	-				+5.6
2,028,356	-				+5.9
2,028,356	-				+6.9
2,028,356	-				+7.0
2,028,359	+				+6.2
2,028,359	+				+5.4
2,028,359	+				+5.0
2,028,359	+				+4.5
2,028,359	+				+5.6
2,028,359	+				+5.4
2,028,360	-				+6.9
2,028,360	-				+6.3
2,028,427	+				+5.5
2,028,441	-				+5.5
2,028,468	+		PP_1805	0.10	+4.4
2,028,469	-		PP_1805	0.10	+5.2
2,028,517	+		PP_1805	0.12	+4.8
2,028,517	+		PP_1805	0.12	+5.2
2,028,549	+		PP_1805	0.14	+5.4
2,028,550	-		PP_1805	0.14	+6.7
2,028,550	-		PP_1805	0.14	+6.0
2,028,596	+		PP_1805	0.16	+4.6
2,028,597	-		PP_1805	0.16	+5.0
2,028,642	+		PP_1805	0.18	+5.6
2,028,642	+		PP_1805	0.18	+5.4
2,028,643	-		PP_1805	0.18	+5.9
2,028,643	-		PP_1805	0.18	+5.1
2,028,643	-		PP_1805	0.18	+4.9
2,028,664	+		PP_1805	0.19	+4.9
2,028,664	+		PP_1805	0.19	+5.1
2,028,693	+		PP_1805	0.21	+4.3
2,028,693	+		PP_1805	0.21	+5.3
2,028,693	+		PP_1805	0.21	+3.7
2,028,693	+		PP_1805	0.21	+4.2
2,028,693	+		PP_1805	0.21	+5.7
2,028,694	-		PP_1805	0.21	+7.4
2,028,727	+		PP_1805	0.23	+4.6
2,028,728	-		PP_1805	0.23	+6.5
2,028,747	+		PP_1805	0.24	+5.5
2,028,784	+		PP_1805	0.25	+6.3
2,028,785	-		PP_1805	0.25	+6.0
2,028,821	-		PP_1805	0.27	+6.2
2,028,828	+		PP_1805	0.27	+5.4
2,028,828	+		PP_1805	0.27	+5.1
2,028,828	+		PP_1805	0.27	+5.3
2,028,829	-		PP_1805	0.27	+5.1
2,028,829	-		PP_1805	0.27	+6.5
2,028,829	-		PP_1805	0.27	+6.0
2,028,829	-		PP_1805	0.27	+6.8
2,028,829	-		PP_1805	0.27	+6.4
2,028,829	-		PP_1805	0.27	+5.5
2,028,829	-		PP_1805	0.27	+4.8
2,028,829	-		PP_1805	0.27	+6.3
2,028,829	-		PP_1805	0.27	+5.9
2,028,954	+		PP_1805	0.34	+5.1
2,028,954	+		PP_1805	0.34	+4.5
2,028,954	+		PP_1805	0.34	+5.1
2,028,955	-		PP_1805	0.34	+7.3
2,028,955	-		PP_1805	0.34	+4.6