Experiment: P. putida PUT 7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1780 and PP_1781 are separated by 97 nucleotides
PP_1780: PP_1780 - putative mannosyltransferase, at 1,988,751 to 1,993,562
_1780
PP_1781: PP_1781 - putative O-acyltransferase, at 1,993,660 to 1,994,748
_1781
Position (kb)
1993
1994
1995 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 1992.764 kb on + strand, within PP_1780 at 1992.765 kb on - strand, within PP_1780 at 1992.797 kb on + strand, within PP_1780 at 1992.797 kb on + strand, within PP_1780 at 1992.798 kb on - strand, within PP_1780 at 1992.807 kb on + strand, within PP_1780 at 1992.807 kb on + strand, within PP_1780 at 1992.808 kb on - strand, within PP_1780 at 1992.808 kb on - strand, within PP_1780 at 1992.855 kb on - strand, within PP_1780 at 1992.855 kb on - strand, within PP_1780 at 1992.956 kb on + strand, within PP_1780 at 1992.957 kb on - strand, within PP_1780 at 1992.968 kb on + strand, within PP_1780 at 1992.969 kb on - strand, within PP_1780 at 1993.007 kb on + strand, within PP_1780 at 1993.008 kb on - strand, within PP_1780 at 1993.017 kb on - strand, within PP_1780 at 1993.085 kb on - strand at 1993.221 kb on + strand at 1993.221 kb on + strand at 1993.222 kb on - strand at 1993.222 kb on - strand at 1993.273 kb on + strand at 1993.274 kb on - strand at 1993.343 kb on - strand at 1993.359 kb on + strand at 1993.362 kb on + strand at 1993.362 kb on + strand at 1993.363 kb on - strand at 1993.363 kb on - strand at 1993.363 kb on - strand at 1993.363 kb on - strand at 1993.363 kb on - strand at 1993.390 kb on + strand at 1993.390 kb on + strand at 1993.390 kb on + strand at 1993.390 kb on + strand at 1993.390 kb on + strand at 1993.391 kb on - strand at 1993.391 kb on - strand at 1993.466 kb on - strand at 1993.523 kb on + strand at 1993.524 kb on - strand at 1993.539 kb on - strand at 1993.539 kb on - strand at 1993.539 kb on - strand at 1993.539 kb on - strand at 1993.568 kb on + strand at 1993.629 kb on - strand at 1993.637 kb on + strand at 1993.637 kb on + strand at 1993.638 kb on - strand at 1993.638 kb on - strand at 1993.638 kb on - strand at 1993.651 kb on + strand at 1993.662 kb on - strand at 1993.700 kb on + strand at 1993.700 kb on + strand at 1993.744 kb on + strand at 1993.790 kb on + strand, within PP_1781 at 1993.791 kb on - strand, within PP_1781 at 1993.800 kb on + strand, within PP_1781 at 1993.801 kb on - strand, within PP_1781 at 1993.801 kb on - strand, within PP_1781 at 1993.801 kb on - strand, within PP_1781 at 1993.801 kb on - strand, within PP_1781 at 1993.801 kb on - strand, within PP_1781 at 1993.865 kb on + strand, within PP_1781 at 1993.865 kb on + strand, within PP_1781 at 1993.866 kb on - strand, within PP_1781 at 1993.874 kb on + strand, within PP_1781 at 1993.874 kb on + strand, within PP_1781 at 1993.874 kb on + strand, within PP_1781 at 1993.874 kb on + strand, within PP_1781 at 1993.874 kb on + strand, within PP_1781 at 1993.874 kb on + strand, within PP_1781 at 1993.874 kb on + strand, within PP_1781 at 1993.875 kb on - strand, within PP_1781 at 1993.875 kb on - strand, within PP_1781 at 1993.951 kb on + strand, within PP_1781 at 1993.952 kb on - strand, within PP_1781 at 1993.954 kb on + strand, within PP_1781 at 1993.970 kb on + strand, within PP_1781 at 1993.970 kb on + strand, within PP_1781 at 1993.970 kb on + strand, within PP_1781 at 1993.970 kb on + strand, within PP_1781 at 1993.970 kb on + strand, within PP_1781 at 1993.970 kb on + strand, within PP_1781 at 1993.971 kb on - strand, within PP_1781 at 1993.971 kb on - strand, within PP_1781 at 1993.971 kb on - strand, within PP_1781 at 1993.971 kb on - strand, within PP_1781 at 1993.984 kb on - strand, within PP_1781 at 1994.031 kb on + strand, within PP_1781 at 1994.031 kb on + strand, within PP_1781 at 1994.032 kb on - strand, within PP_1781 at 1994.084 kb on - strand, within PP_1781 at 1994.084 kb on - strand, within PP_1781 at 1994.084 kb on - strand, within PP_1781 at 1994.101 kb on - strand, within PP_1781 at 1994.101 kb on - strand, within PP_1781 at 1994.101 kb on - strand, within PP_1781 at 1994.102 kb on + strand, within PP_1781 at 1994.102 kb on + strand, within PP_1781 at 1994.103 kb on - strand, within PP_1781 at 1994.103 kb on - strand, within PP_1781 at 1994.103 kb on - strand, within PP_1781 at 1994.103 kb on - strand at 1994.103 kb on - strand, within PP_1781 at 1994.103 kb on - strand, within PP_1781 at 1994.103 kb on - strand, within PP_1781 at 1994.150 kb on + strand, within PP_1781 at 1994.150 kb on + strand at 1994.150 kb on + strand, within PP_1781 at 1994.151 kb on - strand, within PP_1781 at 1994.151 kb on - strand, within PP_1781 at 1994.168 kb on + strand, within PP_1781 at 1994.168 kb on + strand, within PP_1781 at 1994.168 kb on + strand, within PP_1781 at 1994.169 kb on - strand, within PP_1781 at 1994.169 kb on - strand, within PP_1781 at 1994.246 kb on + strand, within PP_1781 at 1994.246 kb on + strand, within PP_1781 at 1994.246 kb on + strand at 1994.246 kb on + strand, within PP_1781 at 1994.246 kb on + strand, within PP_1781 at 1994.247 kb on - strand, within PP_1781 at 1994.254 kb on + strand, within PP_1781 at 1994.254 kb on + strand, within PP_1781 at 1994.254 kb on + strand, within PP_1781 at 1994.254 kb on + strand, within PP_1781 at 1994.255 kb on - strand, within PP_1781 at 1994.255 kb on - strand, within PP_1781 at 1994.255 kb on - strand, within PP_1781 at 1994.321 kb on - strand, within PP_1781 at 1994.348 kb on + strand, within PP_1781 at 1994.348 kb on + strand, within PP_1781 at 1994.367 kb on - strand, within PP_1781 at 1994.375 kb on + strand, within PP_1781 at 1994.375 kb on + strand, within PP_1781 at 1994.396 kb on + strand, within PP_1781 at 1994.396 kb on + strand, within PP_1781 at 1994.397 kb on - strand, within PP_1781 at 1994.425 kb on - strand, within PP_1781 at 1994.431 kb on - strand, within PP_1781 at 1994.431 kb on - strand, within PP_1781 at 1994.431 kb on - strand, within PP_1781 at 1994.440 kb on + strand, within PP_1781 at 1994.447 kb on + strand, within PP_1781 at 1994.449 kb on + strand, within PP_1781 at 1994.449 kb on + strand, within PP_1781 at 1994.449 kb on + strand, within PP_1781 at 1994.449 kb on + strand, within PP_1781 at 1994.450 kb on - strand, within PP_1781 at 1994.526 kb on - strand, within PP_1781 at 1994.526 kb on - strand, within PP_1781 at 1994.547 kb on + strand, within PP_1781 at 1994.547 kb on + strand, within PP_1781 at 1994.547 kb on + strand, within PP_1781 at 1994.548 kb on - strand, within PP_1781 at 1994.582 kb on + strand, within PP_1781 at 1994.582 kb on + strand, within PP_1781 at 1994.583 kb on - strand, within PP_1781 at 1994.583 kb on - strand, within PP_1781 at 1994.583 kb on - strand, within PP_1781 at 1994.583 kb on - strand, within PP_1781 at 1994.641 kb on - strand at 1994.641 kb on - strand at 1994.652 kb on - strand at 1994.652 kb on - strand at 1994.720 kb on + strand at 1994.720 kb on + strand at 1994.721 kb on - strand at 1994.721 kb on - strand at 1994.736 kb on + strand at 1994.836 kb on + strand at 1994.836 kb on + strand at 1994.836 kb on + strand at 1994.836 kb on + strand at 1994.837 kb on - strand at 1994.837 kb on - strand at 1994.837 kb on - strand at 1994.837 kb on - strand at 1994.971 kb on + strand at 1994.997 kb on + strand at 1994.997 kb on + strand at 1995.036 kb on + strand at 1995.036 kb on + strand at 1995.037 kb on - strand at 1995.037 kb on - strand at 1995.202 kb on - strand at 1995.202 kb on - strand at 1995.202 kb on - strand at 1995.215 kb on + strand at 1995.216 kb on - strand at 1995.346 kb on - strand at 1995.373 kb on + strand at 1995.408 kb on + strand at 1995.408 kb on + strand at 1995.409 kb on - strand at 1995.409 kb on - strand at 1995.409 kb on - strand at 1995.409 kb on - strand at 1995.409 kb on - strand at 1995.412 kb on + strand at 1995.412 kb on + strand at 1995.412 kb on + strand at 1995.412 kb on + strand at 1995.413 kb on - strand at 1995.413 kb on - strand at 1995.413 kb on - strand at 1995.413 kb on - strand at 1995.413 kb on - strand at 1995.462 kb on + strand at 1995.462 kb on + strand at 1995.462 kb on + strand at 1995.462 kb on + strand at 1995.462 kb on + strand at 1995.462 kb on + strand at 1995.462 kb on + strand at 1995.463 kb on - strand at 1995.463 kb on - strand at 1995.463 kb on - strand at 1995.463 kb on - strand at 1995.543 kb on - strand at 1995.568 kb on + strand at 1995.568 kb on + strand at 1995.568 kb on + strand at 1995.608 kb on + strand at 1995.623 kb on + strand at 1995.623 kb on + strand at 1995.623 kb on + strand at 1995.623 kb on + strand at 1995.623 kb on + strand at 1995.623 kb on + strand at 1995.624 kb on - strand at 1995.624 kb on - strand at 1995.624 kb on - strand at 1995.684 kb on + strand at 1995.684 kb on + strand at 1995.685 kb on - strand at 1995.685 kb on - strand at 1995.685 kb on - strand at 1995.742 kb on + strand at 1995.742 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1 remove 1,992,764 + PP_1780 0.83 +9.0 1,992,765 - PP_1780 0.83 +5.7 1,992,797 + PP_1780 0.84 +8.3 1,992,797 + PP_1780 0.84 +5.7 1,992,798 - PP_1780 0.84 +5.3 1,992,807 + PP_1780 0.84 +5.1 1,992,807 + PP_1780 0.84 +5.5 1,992,808 - PP_1780 0.84 +7.0 1,992,808 - PP_1780 0.84 +6.2 1,992,855 - PP_1780 0.85 +6.4 1,992,855 - PP_1780 0.85 +6.9 1,992,956 + PP_1780 0.87 +6.7 1,992,957 - PP_1780 0.87 +6.4 1,992,968 + PP_1780 0.88 +6.6 1,992,969 - PP_1780 0.88 +6.9 1,993,007 + PP_1780 0.88 +5.8 1,993,008 - PP_1780 0.88 +5.3 1,993,017 - PP_1780 0.89 +6.1 1,993,085 - +5.1 1,993,221 + +6.4 1,993,221 + +5.6 1,993,222 - +6.0 1,993,222 - +7.1 1,993,273 + +6.4 1,993,274 - +3.5 1,993,343 - +5.6 1,993,359 + +7.0 1,993,362 + +7.3 1,993,362 + +5.7 1,993,363 - +6.1 1,993,363 - +5.9 1,993,363 - +7.2 1,993,363 - +5.5 1,993,363 - +5.9 1,993,390 + +5.8 1,993,390 + +6.8 1,993,390 + +6.8 1,993,390 + +4.1 1,993,390 + +6.7 1,993,391 - +6.3 1,993,391 - +6.2 1,993,466 - +6.5 1,993,523 + -2.4 1,993,524 - +0.5 1,993,539 - -1.2 1,993,539 - +1.0 1,993,539 - +2.8 1,993,539 - -0.2 1,993,568 + +2.2 1,993,629 - -0.5 1,993,637 + +0.7 1,993,637 + +1.4 1,993,638 - -1.3 1,993,638 - +1.0 1,993,638 - -0.7 1,993,651 + -0.2 1,993,662 - -0.6 1,993,700 + -2.9 1,993,700 + -2.2 1,993,744 + -1.6 1,993,790 + PP_1781 0.12 -2.1 1,993,791 - PP_1781 0.12 -2.4 1,993,800 + PP_1781 0.13 -2.5 1,993,801 - PP_1781 0.13 -3.0 1,993,801 - PP_1781 0.13 -2.3 1,993,801 - PP_1781 0.13 -3.4 1,993,801 - PP_1781 0.13 -1.8 1,993,801 - PP_1781 0.13 +0.5 1,993,865 + PP_1781 0.19 -2.1 1,993,865 + PP_1781 0.19 -2.8 1,993,866 - PP_1781 0.19 -2.8 1,993,874 + PP_1781 0.20 -2.1 1,993,874 + PP_1781 0.20 -3.5 1,993,874 + PP_1781 0.20 -2.2 1,993,874 + PP_1781 0.20 -0.3 1,993,874 + PP_1781 0.20 -2.4 1,993,874 + PP_1781 0.20 -3.6 1,993,874 + PP_1781 0.20 -2.7 1,993,875 - PP_1781 0.20 -2.4 1,993,875 - PP_1781 0.20 -2.3 1,993,951 + PP_1781 0.27 -2.4 1,993,952 - PP_1781 0.27 -1.4 1,993,954 + PP_1781 0.27 -1.6 1,993,970 + PP_1781 0.28 -2.4 1,993,970 + PP_1781 0.28 -2.9 1,993,970 + PP_1781 0.28 -3.2 1,993,970 + PP_1781 0.28 -1.6 1,993,970 + PP_1781 0.28 -2.0 1,993,970 + PP_1781 0.28 -2.8 1,993,971 - PP_1781 0.29 +0.6 1,993,971 - PP_1781 0.29 -0.1 1,993,971 - PP_1781 0.29 -1.2 1,993,971 - PP_1781 0.29 -1.4 1,993,984 - PP_1781 0.30 -1.6 1,994,031 + PP_1781 0.34 +0.4 1,994,031 + PP_1781 0.34 -1.2 1,994,032 - PP_1781 0.34 -3.2 1,994,084 - PP_1781 0.39 -3.9 1,994,084 - PP_1781 0.39 -0.2 1,994,084 - PP_1781 0.39 -3.5 1,994,101 - PP_1781 0.40 +0.2 1,994,101 - PP_1781 0.40 -1.8 1,994,101 - PP_1781 0.40 -2.4 1,994,102 + PP_1781 0.41 +0.1 1,994,102 + PP_1781 0.41 -1.6 1,994,103 - PP_1781 0.41 -2.6 1,994,103 - PP_1781 0.41 -2.2 1,994,103 - PP_1781 0.41 -1.9 1,994,103 - +0.4 1,994,103 - PP_1781 0.41 -1.6 1,994,103 - PP_1781 0.41 -3.6 1,994,103 - PP_1781 0.41 -0.0 1,994,150 + PP_1781 0.45 -1.8 1,994,150 + +2.0 1,994,150 + PP_1781 0.45 -1.9 1,994,151 - PP_1781 0.45 -0.9 1,994,151 - PP_1781 0.45 -1.6 1,994,168 + PP_1781 0.47 -3.6 1,994,168 + PP_1781 0.47 -2.5 1,994,168 + PP_1781 0.47 -1.9 1,994,169 - PP_1781 0.47 +0.3 1,994,169 - PP_1781 0.47 -3.1 1,994,246 + PP_1781 0.54 -0.4 1,994,246 + PP_1781 0.54 -0.5 1,994,246 + +1.4 1,994,246 + PP_1781 0.54 -3.1 1,994,246 + PP_1781 0.54 -2.2 1,994,247 - PP_1781 0.54 +0.6 1,994,254 + PP_1781 0.55 -2.8 1,994,254 + PP_1781 0.55 -0.9 1,994,254 + PP_1781 0.55 -3.2 1,994,254 + PP_1781 0.55 -3.2 1,994,255 - PP_1781 0.55 -3.0 1,994,255 - PP_1781 0.55 -1.4 1,994,255 - PP_1781 0.55 -0.0 1,994,321 - PP_1781 0.61 -3.3 1,994,348 + PP_1781 0.63 -1.1 1,994,348 + PP_1781 0.63 -1.2 1,994,367 - PP_1781 0.65 -1.4 1,994,375 + PP_1781 0.66 -2.7 1,994,375 + PP_1781 0.66 -0.9 1,994,396 + PP_1781 0.68 -1.2 1,994,396 + PP_1781 0.68 -2.8 1,994,397 - PP_1781 0.68 -2.8 1,994,425 - PP_1781 0.70 -1.2 1,994,431 - PP_1781 0.71 +0.3 1,994,431 - PP_1781 0.71 -0.6 1,994,431 - PP_1781 0.71 -0.6 1,994,440 + PP_1781 0.72 -3.4 1,994,447 + PP_1781 0.72 -0.2 1,994,449 + PP_1781 0.72 -0.6 1,994,449 + PP_1781 0.72 -2.3 1,994,449 + PP_1781 0.72 -2.7 1,994,449 + PP_1781 0.72 -1.9 1,994,450 - PP_1781 0.73 -1.8 1,994,526 - PP_1781 0.80 -3.4 1,994,526 - PP_1781 0.80 -0.6 1,994,547 + PP_1781 0.81 -0.6 1,994,547 + PP_1781 0.81 -1.2 1,994,547 + PP_1781 0.81 -0.6 1,994,548 - PP_1781 0.82 -2.5 1,994,582 + PP_1781 0.85 -2.4 1,994,582 + PP_1781 0.85 -0.5 1,994,583 - PP_1781 0.85 -1.9 1,994,583 - PP_1781 0.85 +0.8 1,994,583 - PP_1781 0.85 -3.5 1,994,583 - PP_1781 0.85 -2.1 1,994,641 - -1.6 1,994,641 - -0.0 1,994,652 - -3.5 1,994,652 - -3.3 1,994,720 + -0.3 1,994,720 + -2.5 1,994,721 - -2.3 1,994,721 - -2.2 1,994,736 + -1.6 1,994,836 + -2.2 1,994,836 + -3.2 1,994,836 + -1.6 1,994,836 + -2.4 1,994,837 - +0.6 1,994,837 - +1.1 1,994,837 - -1.0 1,994,837 - -0.0 1,994,971 + -0.6 1,994,997 + -0.9 1,994,997 + +2.3 1,995,036 + -0.6 1,995,036 + +2.2 1,995,037 - +0.9 1,995,037 - +0.4 1,995,202 - +0.8 1,995,202 - -0.3 1,995,202 - -0.3 1,995,215 + -1.6 1,995,216 - +0.4 1,995,346 - -2.9 1,995,373 + -1.2 1,995,408 + +0.6 1,995,408 + +0.7 1,995,409 - +1.6 1,995,409 - +0.6 1,995,409 - -2.5 1,995,409 - +0.7 1,995,409 - -1.9 1,995,412 + -0.6 1,995,412 + -2.4 1,995,412 + +0.3 1,995,412 + -0.7 1,995,413 - +1.7 1,995,413 - +1.5 1,995,413 - +1.4 1,995,413 - -0.4 1,995,413 - +1.1 1,995,462 + +0.3 1,995,462 + +0.1 1,995,462 + +1.1 1,995,462 + +2.4 1,995,462 + -1.7 1,995,462 + +1.2 1,995,462 + +0.6 1,995,463 - -0.4 1,995,463 - +1.0 1,995,463 - +0.1 1,995,463 - +0.4 1,995,543 - +2.4 1,995,568 + -1.3 1,995,568 + +2.2 1,995,568 + +0.1 1,995,608 + +3.6 1,995,623 + +1.9 1,995,623 + -0.1 1,995,623 + -0.1 1,995,623 + -1.0 1,995,623 + -1.5 1,995,623 + +2.0 1,995,624 - +0.4 1,995,624 - +0.3 1,995,624 - +0.1 1,995,684 + +1.0 1,995,684 + -1.8 1,995,685 - +1.4 1,995,685 - +3.0 1,995,685 - -0.8 1,995,742 + +0.6 1,995,742 + +0.8
Or see this region's nucleotide sequence