Strain Fitness in Pseudomonas putida KT2440 around PP_1775

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,981,183	-				-1.2
1,981,221	-				+0.3
1,981,221	-				-0.1
1,981,224	+				-1.8
1,981,225	-				+2.4
1,981,225	-				+1.7
1,981,231	+				-0.2
1,981,271	+				+0.0
1,981,272	-				+0.8
1,981,360	+				-1.8
1,981,387	+				-1.1
1,981,387	+				-2.4
1,981,387	+				-1.3
1,981,388	-				-3.1
1,981,388	-				-0.6
1,981,726	+		PP_1774	0.30	+0.6
1,981,727	-		PP_1774	0.30	+0.5
1,981,727	-		PP_1774	0.30	+1.4
1,981,945	-				-1.5
1,981,945	-				+0.0
1,981,963	+				+0.7
1,981,963	+				-1.2
1,981,964	-				+1.5
1,981,964	-				+1.1
1,981,964	-				+0.1
1,981,964	-				+1.6
1,981,966	+				-1.6
1,981,967	-				+0.3
1,981,982	+				+0.8
1,981,982	+				-2.4
1,981,983	-				+0.1
1,981,983	-				+1.4
1,981,983	-				-0.6
1,981,983	-				+1.0
1,982,007	+				-2.4
1,982,008	-				+1.4
1,982,008	-				-0.5
1,982,008	-				+0.5
1,982,010	+				+0.1
1,982,011	-				+0.3
1,982,011	-				-1.5
1,982,052	+				-1.3
1,982,304	-		PP_1775	0.18	-2.7
1,982,359	-		PP_1775	0.22	+0.9
1,982,359	-		PP_1775	0.22	+0.9
1,982,401	-		PP_1775	0.25	-2.3
1,982,423	+		PP_1775	0.26	-2.2
1,982,424	-		PP_1775	0.26	+0.6
1,982,487	-		PP_1775	0.31	-0.6
1,982,526	+		PP_1775	0.33	-0.1
1,982,527	-		PP_1775	0.33	+1.4
1,982,527	-		PP_1775	0.33	+1.3
1,982,540	+		PP_1775	0.34	+0.7
1,982,569	-		PP_1775	0.36	+0.3
1,982,569	-		PP_1775	0.36	+1.4
1,982,664	+		PP_1775	0.43	+1.0
1,982,796	+		PP_1775	0.52	+1.1
1,983,057	+		PP_1775	0.70	+0.6
1,983,057	+		PP_1775	0.70	+1.0
1,983,132	+		PP_1775	0.76	+1.4
1,983,133	-		PP_1775	0.76	+4.0
1,983,212	-		PP_1775	0.81	+4.7
1,983,271	-		PP_1775	0.85	+5.3
1,983,271	-		PP_1775	0.85	+6.2
1,983,450	-				+4.3
1,983,470	+				-2.3
1,983,470	+				+0.1
1,983,470	+				+0.2
1,983,471	-				+7.5
1,983,471	-				+5.9
1,983,471	-				+4.9
1,983,471	-				+5.2
1,983,471	-				+3.9
1,983,481	-				+5.5
1,983,564	+				-0.9
1,983,565	-				+4.4
1,983,625	+				+1.3
1,983,625	+				-0.2
1,983,625	+				-1.5
1,983,625	+				+0.4
1,983,625	+				+1.1
1,983,626	-				+6.1
1,983,626	-				+6.6
1,983,626	-				+5.2
1,983,644	+				+0.8
1,983,644	+				+0.5
1,983,650	-				+4.9
1,983,710	-				+5.6
1,983,710	-				+6.2
1,983,713	+				-1.4
1,983,714	-				+6.9
1,983,748	+				+4.9
1,983,749	-				+5.9
1,983,751	+				+6.0
1,983,751	+				+5.1
1,983,751	+				+5.1
1,983,752	-				+6.0
1,983,752	-				+6.1
1,983,756	+				+6.1
1,983,756	+				+6.0
1,983,756	+				+5.0
1,983,756	+				+4.8
1,983,757	-				+5.3
1,983,757	-				+7.0
1,983,757	-				+6.9
1,983,865	+				+6.5
1,983,866	-				+6.3
1,984,053	+		PP_1776	0.17	+6.9
1,984,053	+		PP_1776	0.17	+5.8
1,984,053	+		PP_1776	0.17	+5.9
1,984,253	+		PP_1776	0.31	+5.3
1,984,254	-		PP_1776	0.31	+6.4
1,984,254	-		PP_1776	0.31	+5.0
1,984,264	-		PP_1776	0.31	+6.3
1,984,284	+		PP_1776	0.33	+6.1
1,984,284	+		PP_1776	0.33	+5.7
1,984,285	-		PP_1776	0.33	+6.4
1,984,324	+		PP_1776	0.36	+6.0
1,984,325	-		PP_1776	0.36	+5.9
1,984,325	-		PP_1776	0.36	+5.8
1,984,374	+		PP_1776	0.39	+5.3
1,984,375	-		PP_1776	0.39	+6.5
1,984,375	-		PP_1776	0.39	+6.3
1,984,375	-		PP_1776	0.39	+5.5
1,984,375	-		PP_1776	0.39	+6.7
1,984,375	-		PP_1776	0.39	+6.4
1,984,392	+		PP_1776	0.40	+5.7
1,984,393	-		PP_1776	0.40	+6.8
1,984,455	+		PP_1776	0.45	+6.4
1,984,455	+		PP_1776	0.45	+6.3
1,984,455	+		PP_1776	0.45	+3.9
1,984,456	-				+5.2
1,984,456	-		PP_1776	0.45	+6.7