Strain Fitness in Pseudomonas putida KT2440 around PP_1749

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,946,919	+		PP_1748	0.31	+0.7
1,946,919	+		PP_1748	0.31	+0.5
1,946,926	-		PP_1748	0.31	-2.8
1,947,153	-		PP_1748	0.50	+0.5
1,947,283	-		PP_1748	0.61	-1.2
1,947,633	+				+0.2
1,947,634	-				-0.2
1,947,825	+				-0.9
1,947,848	+				-1.9
1,948,019	-				+0.4
1,948,214	-		PP_1749	0.17	+1.3
1,948,337	+		PP_1749	0.25	+0.6
1,948,829	-		PP_1749	0.53	+3.2
1,948,936	+		PP_1749	0.59	-1.2
1,948,985	-		PP_1749	0.62	+0.7
1,948,985	-		PP_1749	0.62	+0.4
1,949,183	-		PP_1749	0.73	+1.1
1,949,210	+		PP_1749	0.75	-0.9
1,949,252	-		PP_1749	0.77	+0.3
1,949,316	+				+1.4
1,949,425	+		PP_1749	0.87	-1.4
1,949,426	-		PP_1749	0.87	+1.9
1,949,426	-		PP_1749	0.87	-2.3
1,949,426	-		PP_1749	0.87	-1.8
1,949,506	-				+0.2
1,949,506	-				-2.1
1,949,632	+				-0.5
1,949,872	+		PP_1750	0.12	-0.4
1,949,872	+		PP_1750	0.12	+2.2
1,949,873	-		PP_1750	0.12	+1.2
1,949,873	-		PP_1750	0.12	+1.2
1,949,999	-		PP_1750	0.19	-1.2
1,950,208	+		PP_1750	0.31	+0.1
1,950,254	-		PP_1750	0.33	+1.2
1,950,254	-		PP_1750	0.33	+0.2
1,950,254	-		PP_1750	0.33	-0.6
1,950,254	-		PP_1750	0.33	+1.0
1,950,330	+		PP_1750	0.38	-2.2
1,950,331	-		PP_1750	0.38	-0.7
1,950,370	+		PP_1750	0.40	+1.4
1,950,370	+		PP_1750	0.40	+2.0
1,950,370	+		PP_1750	0.40	-1.8
1,950,371	-		PP_1750	0.40	+0.8
1,950,371	-		PP_1750	0.40	+0.9
1,950,371	-		PP_1750	0.40	+0.4
1,950,484	+		PP_1750	0.46	+0.6
1,950,484	+		PP_1750	0.46	+0.5
1,950,484	+		PP_1750	0.46	+0.6