Strain Fitness in Pseudomonas putida KT2440 around PP_1709

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,907,626	+		PP_1707	0.88	-1.8
1,907,626	+		PP_1707	0.88	-1.7
1,907,626	+		PP_1707	0.88	+1.4
1,907,626	+		PP_1707	0.88	-1.0
1,907,627	-		PP_1707	0.88	-0.6
1,907,627	-		PP_1707	0.88	-2.0
1,907,627	-		PP_1707	0.88	-2.9
1,907,650	+				-2.3
1,907,653	+				+0.2
1,907,753	+				+1.9
1,907,753	+				+0.7
1,907,753	+				-3.3
1,907,753	+				-1.2
1,907,753	+				+0.1
1,907,814	+				-2.1
1,907,814	+				-2.1
1,907,815	-				-0.2
1,907,815	-				+0.4
1,907,841	+		PP_1708	0.10	-1.4
1,907,842	-		PP_1708	0.10	+0.8
1,907,842	-		PP_1708	0.10	-0.3
1,907,845	+		PP_1708	0.11	-2.7
1,907,845	+		PP_1708	0.11	+0.6
1,907,846	-		PP_1708	0.11	+0.2
1,907,846	-		PP_1708	0.11	-2.5
1,907,989	+		PP_1708	0.30	-2.9
1,908,052	+		PP_1708	0.38	+0.4
1,908,053	-		PP_1708	0.38	+0.2
1,908,138	-		PP_1708	0.49	-0.7
1,908,138	-		PP_1708	0.49	-1.0
1,908,138	-		PP_1708	0.49	+0.0
1,908,168	+		PP_1708	0.53	+0.0
1,908,168	+		PP_1708	0.53	-3.2
1,908,168	+		PP_1708	0.53	+0.8
1,908,168	+		PP_1708	0.53	-0.1
1,908,169	-		PP_1708	0.53	-1.6
1,908,169	-		PP_1708	0.53	-0.5
1,908,169	-		PP_1708	0.53	-0.7
1,908,373	-		PP_1708	0.80	-0.7
1,908,396	+		PP_1708	0.83	+1.5
1,908,792	+		PP_1709	0.35	+0.1
1,908,793	-		PP_1709	0.36	-2.0
1,908,801	-		PP_1709	0.37	-2.5
1,908,801	-		PP_1709	0.37	-0.9
1,908,864	+		PP_1709	0.46	-0.4
1,908,865	-		PP_1709	0.46	-2.0
1,909,244	-				-0.5
1,909,244	-				-0.5
1,909,265	+				-0.2
1,909,377	+				-1.0
1,909,378	-				-2.0
1,909,378	-				-0.1
1,909,385	+				-3.5
1,909,406	+				-2.1
1,909,458	+				-2.1
1,909,458	+				+1.0
1,909,458	+				+0.1
1,909,458	+				-0.4
1,909,459	-				+1.6
1,909,499	+				+0.5
1,909,499	+				+0.9
1,909,500	-				-1.6
1,909,524	-				+0.5
1,909,723	+		PP_1710	0.19	+1.7
1,909,723	+		PP_1710	0.19	-2.2
1,909,723	+		PP_1710	0.19	-3.4
1,909,985	+		PP_1710	0.38	+1.2
1,909,985	+		PP_1710	0.38	+0.5
1,909,985	+		PP_1710	0.38	+0.8
1,909,985	+		PP_1710	0.38	-0.6
1,909,985	+		PP_1710	0.38	-2.4
1,909,985	+		PP_1710	0.38	-2.1
1,909,986	-		PP_1710	0.38	-1.7
1,909,986	-		PP_1710	0.38	-0.5
1,909,986	-		PP_1710	0.38	+1.1
1,910,001	+		PP_1710	0.40	+0.0
1,910,012	+		PP_1710	0.40	-0.4
1,910,012	+		PP_1710	0.40	-2.0
1,910,013	-		PP_1710	0.40	+1.9
1,910,066	+		PP_1710	0.44	+0.6
1,910,106	+		PP_1710	0.47	+0.3
1,910,151	-		PP_1710	0.51	-3.6
1,910,170	+		PP_1710	0.52	-3.2
1,910,170	+		PP_1710	0.52	-0.8
1,910,171	-		PP_1710	0.52	+0.8
1,910,171	-		PP_1710	0.52	+2.1
1,910,199	-		PP_1710	0.54	+1.2
1,910,249	+		PP_1710	0.58	-0.1