Strain Fitness in Pseudomonas putida KT2440 around PP_1673

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,867,053	+				+0.5
1,867,145	+				+0.2
1,867,146	-				+1.4
1,867,229	+				+0.8
1,867,230	-				-2.4
1,867,230	-				-2.9
1,867,230	-				+1.0
1,867,232	+				-2.2
1,867,232	+				-2.7
1,867,232	+				-0.1
1,867,386	-		PP_1672	0.17	-2.5
1,867,386	-		PP_1672	0.17	-0.1
1,867,550	-		PP_1672	0.44	-2.3
1,867,550	-		PP_1672	0.44	+1.0
1,867,572	+		PP_1672	0.48	-0.2
1,867,661	+		PP_1672	0.62	+2.1
1,867,662	-		PP_1672	0.63	-1.2
1,867,662	-		PP_1672	0.63	-2.1
1,867,662	-		PP_1672	0.63	+0.4
1,867,708	+		PP_1672	0.70	-0.8
1,867,709	-		PP_1672	0.70	+1.9
1,867,728	-		PP_1672	0.73	-0.2
1,867,728	-		PP_1672	0.73	-0.2
1,867,861	-				-0.6
1,867,952	+				+0.4
1,867,952	+				+0.3
1,868,073	+		PP_1673	0.14	-1.6
1,868,074	-		PP_1673	0.14	-1.2
1,868,609	-				+1.4
1,868,609	-		PP_1673	0.56	+0.4
1,868,643	+		PP_1673	0.58	-2.1
1,868,644	-		PP_1673	0.58	+1.1
1,868,644	-		PP_1673	0.58	-2.1
1,868,644	-		PP_1673	0.58	-1.4
1,868,651	+		PP_1673	0.59	-1.8
1,868,740	-		PP_1673	0.66	+0.0
1,868,740	-		PP_1673	0.66	-1.0
1,868,740	-		PP_1673	0.66	-1.6
1,869,012	+		PP_1673	0.87	-2.7
1,869,012	+		PP_1673	0.87	-1.4
1,869,012	+		PP_1673	0.87	-0.2
1,869,013	-		PP_1673	0.87	-2.0
1,869,013	-		PP_1673	0.87	-1.5
1,869,124	-				-2.5
1,869,124	-				-0.6
1,869,135	+				-2.1
1,869,136	-				-0.5
1,869,136	-				-1.1
1,869,136	-				-2.0
1,869,194	+				-1.5
1,869,334	+		PP_1674	0.24	-2.0
1,869,335	-		PP_1674	0.24	-1.6
1,869,335	-		PP_1674	0.24	-2.1
1,869,335	-		PP_1674	0.24	-1.6
1,869,335	-		PP_1674	0.24	+0.1
1,869,352	+		PP_1674	0.27	-3.2
1,869,359	-		PP_1674	0.28	+2.4
1,869,477	+		PP_1674	0.46	-0.3
1,869,478	-		PP_1674	0.46	+0.2
1,869,709	-		PP_1674	0.81	-2.2
1,869,737	+		PP_1674	0.86	-0.3
1,869,738	-		PP_1674	0.86	-0.8
1,869,918	+		PP_1675	0.12	+0.4
1,869,919	-		PP_1675	0.12	+0.2
1,870,046	-		PP_1675	0.25	+0.8