Strain Fitness in Pseudomonas putida KT2440 around PP_1652

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,844,712	+				+0.5
1,844,713	-				+0.6
1,844,713	-				+0.7
1,844,852	+				+0.3
1,844,852	+				+0.5
1,844,853	-				+0.5
1,844,882	+				+0.6
1,844,882	+				-1.1
1,844,882	+				-1.0
1,844,882	+				+1.0
1,844,882	+				-0.2
1,844,883	-				-0.6
1,844,883	-				-2.2
1,844,883	-				-0.0
1,844,883	-				+0.7
1,844,883	-				-1.0
1,844,885	+				+0.3
1,844,885	+				-0.2
1,844,885	+				-1.2
1,844,892	+				+0.6
1,844,893	-				+0.4
1,844,953	+				+0.4
1,845,053	+		PP_1651	0.14	-2.8
1,845,054	-		PP_1651	0.14	+0.0
1,845,054	-		PP_1651	0.14	-0.0
1,845,147	-		PP_1651	0.27	-1.0
1,845,268	+		PP_1651	0.42	+1.3
1,845,268	+		PP_1651	0.42	-2.4
1,845,299	+		PP_1651	0.46	-1.7
1,845,299	+		PP_1651	0.46	-2.8
1,845,300	-		PP_1651	0.47	-0.2
1,845,546	-		PP_1651	0.79	-0.5
1,845,569	+		PP_1651	0.82	-1.0
1,845,586	+		PP_1651	0.84	+0.2
1,845,677	+				-3.1
1,845,677	+				-2.7
1,845,677	+				-1.0
1,845,678	-				-3.1
1,845,788	+				-2.9
1,845,788	+				+0.7
1,845,788	+				-0.6
1,845,788	+				+0.2
1,845,789	-				-1.3
1,845,789	-				+0.7
1,845,790	+				-3.6
1,845,790	+				-0.4
1,846,089	+		PP_1652	0.28	-2.3
1,846,090	-		PP_1652	0.28	-3.1
1,846,227	+		PP_1652	0.38	-1.1
1,846,228	-		PP_1652	0.38	+0.2
1,846,228	-		PP_1652	0.38	-0.6
1,846,228	-		PP_1652	0.38	-0.0
1,846,405	+		PP_1652	0.50	-0.3
1,846,655	+		PP_1652	0.69	-2.4
1,846,656	-		PP_1652	0.69	+0.3
1,846,822	+		PP_1652	0.81	-0.8
1,846,822	+		PP_1652	0.81	+0.4
1,846,823	-		PP_1652	0.81	-0.6
1,846,826	+		PP_1652	0.81	+0.7
1,846,826	+		PP_1652	0.81	-0.2
1,846,826	+		PP_1652	0.81	-2.6
1,846,826	+		PP_1652	0.81	+0.4
1,846,826	+		PP_1652	0.81	-0.9
1,846,826	+		PP_1652	0.81	+1.9
1,846,826	+		PP_1652	0.81	-2.2
1,846,826	+		PP_1652	0.81	-1.9
1,846,827	-		PP_1652	0.81	-1.4
1,846,827	-		PP_1652	0.81	-0.3
1,847,080	-				+0.3
1,847,080	-				+0.3
1,847,080	-				-1.9
1,847,080	-				-1.5
1,847,080	-				-2.5
1,847,080	-				-2.5
1,847,080	-				-1.4