Strain Fitness in Pseudomonas putida KT2440 around PP_1647

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,839,137	+				-1.2
1,839,138	-				+0.1
1,839,138	-				-1.9
1,839,140	+				-0.4
1,839,141	-				-2.4
1,839,156	-				+2.4
1,839,320	+		PP_1645	0.44	-0.1
1,839,320	+		PP_1645	0.44	-1.8
1,839,320	+		PP_1645	0.44	+0.3
1,839,320	+		PP_1645	0.44	-0.8
1,839,321	-		PP_1645	0.44	-1.5
1,839,321	-		PP_1645	0.44	+1.6
1,839,321	-		PP_1645	0.44	-2.9
1,839,322	+		PP_1645	0.44	-2.7
1,839,323	-		PP_1645	0.45	+0.3
1,839,418	+		PP_1645	0.71	+1.3
1,839,419	-		PP_1645	0.72	-1.8
1,839,494	+				-2.5
1,839,495	-				+0.2
1,839,500	-				-0.7
1,839,500	-				+0.3
1,839,554	+				-0.1
1,839,555	-				+1.5
1,839,555	-				-1.2
1,839,627	-				+1.0
1,839,693	+		PP_1646	0.19	+0.3
1,839,696	+		PP_1646	0.20	-0.1
1,839,697	-		PP_1646	0.20	-2.4
1,839,697	-		PP_1646	0.20	-3.1
1,839,697	-		PP_1646	0.20	+1.0
1,839,970	+		PP_1646	0.79	-1.6
1,840,192	-		PP_1647	0.20	-0.1
1,840,340	-		PP_1647	0.55	-0.2
1,840,381	+		PP_1647	0.64	+0.4
1,840,382	-		PP_1647	0.64	-1.6
1,840,420	+		PP_1647	0.73	-2.4
1,840,421	-		PP_1647	0.73	-1.2
1,840,421	-		PP_1647	0.73	-1.4
1,840,921	-				-3.1
1,840,969	+				-1.2
1,840,970	-				-0.3
1,840,976	-				+1.4
1,841,186	-		PP_1649	0.21	-0.7
1,841,382	+		PP_1649	0.40	+0.3
1,841,447	-		PP_1649	0.46	-1.6