Strain Fitness in Pseudomonas putida KT2440 around PP_1634

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
1,830,124	+				+1.0
1,830,125	-				+0.5
1,830,141	+				-2.5
1,830,142	-				-0.8
1,830,229	-				+1.2
1,830,280	+				-0.9
1,830,299	-		PP_1632	0.18	-0.2
1,830,299	-		PP_1632	0.18	+0.4
1,830,487	+				+3.0
1,830,487	+				-2.7
1,830,488	-				-0.5
1,830,488	-				+1.0
1,830,559	+		PP_1633	0.17	+1.1
1,830,574	+		PP_1633	0.21	-1.9
1,830,574	+		PP_1633	0.21	+2.1
1,830,575	-		PP_1633	0.21	+2.2
1,830,696	+		PP_1633	0.50	+0.5
1,830,737	-		PP_1633	0.60	-1.1
1,830,826	+		PP_1633	0.81	+0.4
1,830,827	-		PP_1633	0.81	+0.4
1,830,893	+				+1.1
1,830,993	+				-1.6
1,831,005	+				+1.2
1,831,006	-				+1.5
1,831,007	+				+0.5
1,831,007	+				-0.9
1,831,007	+				-1.3
1,831,007	+				-0.2
1,831,007	+				-0.2
1,831,008	-				-1.9
1,831,008	-				-1.3
1,831,008	-				+0.6
1,831,259	+		PP_1634	0.19	+0.1
1,831,259	+		PP_1634	0.19	-1.6
1,831,260	-		PP_1634	0.19	-3.0
1,831,437	+		PP_1634	0.44	+1.7
1,831,437	+		PP_1634	0.44	-1.9
1,831,437	+		PP_1634	0.44	+1.8
1,831,438	-		PP_1634	0.44	-1.2
1,831,438	-				+2.4
1,831,438	-		PP_1634	0.44	+0.8
1,831,438	-		PP_1634	0.44	+0.1
1,831,440	-		PP_1634	0.45	-2.9
1,831,440	-		PP_1634	0.45	-0.0
1,831,576	-		PP_1634	0.64	-0.9
1,831,735	-		PP_1634	0.86	-1.8
1,831,758	+		PP_1634	0.89	-0.7
1,831,758	+		PP_1634	0.89	+0.9
1,831,758	+		PP_1634	0.89	-3.4
1,831,758	+		PP_1634	0.89	-1.2
1,831,758	+		PP_1634	0.89	-1.4
1,831,759	-		PP_1634	0.90	-1.4
1,831,759	-		PP_1634	0.90	+0.3
1,831,759	-		PP_1634	0.90	-3.2
1,831,828	+				-0.9
1,831,828	+				-0.2
1,831,828	+				-2.4
1,831,828	+				+0.4
1,831,828	+				-0.7
1,831,829	-				-1.1
1,831,829	-				+2.5
1,831,830	+				+0.5
1,831,830	+				-0.9
1,831,831	-				+1.0
1,831,831	-				-0.6
1,831,863	+				+0.4
1,831,863	+				-0.2
1,831,864	-				+2.1
1,831,864	-				-0.5
1,832,005	+				+1.1
1,832,005	+				-2.0
1,832,005	+				+0.9
1,832,377	-		PP_1635	0.56	+0.2
1,832,534	+		PP_1635	0.80	+0.8
1,832,574	+		PP_1635	0.86	-3.6